annotate test-data/test_5/amrfinderplus_results.tsv @ 0:a968af0a91f9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 73f592a7f1c1e9577bbf56a1347bd5c01bb8ea14

Name	Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description	Hierarchy node
test_5	IDOBJL_13105	contig_26	6635	8548	+	optrA	ABC-F type ribosomal protection protein OptrA	core	AMR	AMR	PHENICOL/OXAZOLIDINONE	FLORFENICOL/OXAZOLIDINONE	BLASTP	637	655	97.25	100.00	637	WP_063854496.1	ABC-F type ribosomal protection protein OptrA	NA	NA	optrA
test_5	IDOBJL_14770	contig_46	2435	3229	-	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	BLASTP	264	264	100.00	99.62	264	WP_063841495.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	NA	aph(3')-IIIa
test_5	IDOBJL_14770	contig_46	2435	3229	-	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	BLASTP	264	264	100.00	99.62	264	WP_063841507.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	NA	aph(3')-IIIa
test_5	IDOBJL_14775	contig_46	3322	3864	-	sat4	streptothricin N-acetyltransferase Sat4	core	AMR	AMR	STREPTOTHRICIN	STREPTOTHRICIN	BLASTP	180	180	100.00	99.44	180	WP_063854934.1	streptothricin N-acetyltransferase Sat4	NA	NA	sat4
test_5	IDOBJL_14820	contig_47	3993	5912	-	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	639	639	100.00	99.84	639	WP_063856395.1	tetracycline resistance ribosomal protection protein Tet(M)	NA	NA	tet(M)
test_5	IDOBJL_14830	contig_48	199	936	-	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	core	AMR	AMR	MACROLIDE	MACROLIDE	BLASTP	245	245	100.00	99.59	245	WP_063844601.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	NA	erm(B)
test_5	IDOBJL_14880	contig_50	282	1658	+	tet(L)	tetracycline efflux MFS transporter Tet(L)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	458	458	100.00	99.78	458	WP_063856080.1	tetracycline efflux MFS transporter Tet(L)	NA	NA	tet(L)