Mercurial > repos > iuc > amrfinderplus
view test-data/test_5/amrfinderplus_results.tsv @ 7:7844dbe4f8e2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 991998a3bb25e0059a8441975c652c7a75063709
| author | iuc |
|---|---|
| date | Thu, 30 May 2024 13:07:03 +0000 |
| parents | a968af0a91f9 |
| children |
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Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node test_5 IDOBJL_13105 contig_26 6635 8548 + optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE BLASTP 637 655 97.25 100.00 637 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA optrA test_5 IDOBJL_14770 contig_46 2435 3229 - aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTP 264 264 100.00 99.62 264 WP_063841495.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA aph(3')-IIIa test_5 IDOBJL_14770 contig_46 2435 3229 - aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTP 264 264 100.00 99.62 264 WP_063841507.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA aph(3')-IIIa test_5 IDOBJL_14775 contig_46 3322 3864 - sat4 streptothricin N-acetyltransferase Sat4 core AMR AMR STREPTOTHRICIN STREPTOTHRICIN BLASTP 180 180 100.00 99.44 180 WP_063854934.1 streptothricin N-acetyltransferase Sat4 NA NA sat4 test_5 IDOBJL_14820 contig_47 3993 5912 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 639 639 100.00 99.84 639 WP_063856395.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA tet(M) test_5 IDOBJL_14830 contig_48 199 936 - erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR MACROLIDE MACROLIDE BLASTP 245 245 100.00 99.59 245 WP_063844601.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA erm(B) test_5 IDOBJL_14880 contig_50 282 1658 + tet(L) tetracycline efflux MFS transporter Tet(L) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 458 458 100.00 99.78 458 WP_063856080.1 tetracycline efflux MFS transporter Tet(L) NA NA tet(L)