Mercurial > repos > iuc > amrfinderplus_data_manager_build

changeset 1:592ef3959907 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_amrfinderplus commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:29:18 +0000
parents eea0c38a9afd
children a5921c09b7b7
files data_manager/data_manager_build_amrfinderplus.xml data_manager_conf.xml test-data/amrfinderplus_test_data_manager_1.json
diffstat 3 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_build_amrfinderplus.xml	Thu Jan 05 14:28:07 2023 +0000
+++ b/data_manager/data_manager_build_amrfinderplus.xml	Sun Apr 16 08:29:18 2023 +0000
@@ -69,7 +69,13 @@
         <!-- Test_1 DB latest -->
         <test expect_num_outputs="1">
             <param name="test_data_manager" value="--test"/>
-            <output name="output_file" value="amrfinderplus_test_data_manager_1.json"/>
+            <output name="output_file">
+                <assert_contents>
+                    <has_n_lines n="1"/>
+                    <has_text text="{&quot;data_tables&quot;"/>
+                    <has_text text="amrfinderplus_database"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- Test_2 DB 3.2 -->
         <test expect_num_outputs="1">
--- a/data_manager_conf.xml	Thu Jan 05 14:28:07 2023 +0000
+++ b/data_manager_conf.xml	Sun Apr 16 08:29:18 2023 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager/data_manager_build_amrfinderplus.xml" id="data_manager_build_amrfinderplus" version="@TOOL_VERSION@">
+    <data_manager tool_file="data_manager/data_manager_build_amrfinderplus.xml" id="data_manager_build_amrfinderplus">
         <data_table name="amrfinderplus_database">
             <output>
                 <column name="value" />
--- a/test-data/amrfinderplus_test_data_manager_1.json	Thu Jan 05 14:28:07 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-{"data_tables": {"amrfinderplus_database": [{"name": "V3.11-2022-12-19.1", "path": "amrfinderplus-db", "value": "amrfinderplus_V3.11_2022-12-19.1"}]}}
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