Mercurial > repos > iuc > bakta
view test-data/TEST_2/TEST_2.log @ 1:da5f1924bb2e draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
| author | iuc |
|---|---|
| date | Fri, 16 Sep 2022 13:42:15 +0000 |
| parents | 1a27ad3d0cdf |
| children | 865ece5ca178 |
line wrap: on
line source
parse genome sequences... imported: 1 filtered & revised: 1 plasmids: 1 start annotation... skip tRNA prediction... skip tmRNA prediction... predict rRNAs... found: 0 predict ncRNAs... found: 0 predict ncRNA regions... found: 0 predict CRISPR arrays... found: 0 predict & annotate CDSs... predicted: 2 discarded spurious: 0 revised translational exceptions: 0 detected IPSs: 0 found PSCs: 0 found PSCCs: 0 lookup annotations... conduct expert systems... amrfinder: 0 protein sequences: 0 combine annotations and mark hypotheticals... detect pseudogenes... pseudogene candidates: 0 found pseudogenes: 0 analyze hypothetical proteins: 2 detected Pfam hits: 0 calculated proteins statistics revise special cases... extract sORF... potential: 22 discarded due to overlaps: 2 discarded spurious: 0 detected IPSs: 0 found PSCs: 0 lookup annotations... filter and combine annotations... filtered sORFs: 0 detect gaps... found: 0 detect oriCs/oriVs... found: 0 detect oriTs... found: 0 apply feature overlap filters... select features and create locus tags... selected: 2 genome statistics: Genome size: 1,330 bp Contigs/replicons: 1 GC: 45.2 % N50: 1,330 N ratio: 0.0 % coding density: 62.0 % annotation summary: tRNAs: 0 tmRNAs: 0 rRNAs: 0 ncRNAs: 0 ncRNA regions: 0 CRISPR arrays: 0 CDSs: 2 hypotheticals: 2 pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working human readable TSV... GFF3... INSDC GenBank & EMBL... genome sequences... feature nucleotide sequences... translated CDS sequences... hypothetical TSV... translated hypothetical CDS sequences... machine readable JSON... genome and annotation summary... If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 Annotation successfully finished in 0:00 [mm:ss].