Mercurial > repos > iuc > bam_to_scidx
changeset 2:bd79c4d39af0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bam_to_scidx commit d12fc0b2960551d8659d7079e15a3d4e214786b3
author | iuc |
---|---|
date | Wed, 15 Jun 2016 10:50:24 -0400 |
parents | ebbf2a6a4c55 |
children | 11fc60f0e942 |
files | bam_to_scidx.xml |
diffstat | 1 files changed, 8 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- a/bam_to_scidx.xml Tue Apr 19 18:10:09 2016 -0400 +++ b/bam_to_scidx.xml Wed Jun 15 10:50:24 2016 -0400 @@ -3,6 +3,14 @@ <requirements> <requirement type="package" version="8.0.45">java-jdk</requirement> </requirements> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range=":-1" /> + <exit_code range="1:" /> + <!-- Check stderr in case the return code has not been set --> + <regex match="Error:" /> + <regex match="Exception:" /> + </stdio> <command> <![CDATA[ ln -f -s "${input_bam.metadata.bam_index}" "${input_bam}.bai" &&