Mercurial > repos > iuc > bam_to_scidx
changeset 1:ebbf2a6a4c55 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bam_to_scidx commit f33b04533bca91242b8a0a4077e1d593f5a874e0
author | iuc |
---|---|
date | Tue, 19 Apr 2016 18:10:09 -0400 |
parents | 741b8af6386c |
children | bd79c4d39af0 |
files | bam_to_scidx.xml test-data/output.scidx |
diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/bam_to_scidx.xml Sat Dec 12 15:46:03 2015 -0500 +++ b/bam_to_scidx.xml Tue Apr 19 18:10:09 2016 -0400 @@ -1,5 +1,8 @@ <tool id="bam_to_scidx" name="Convert BAM to ScIdx" version="1.0.0"> <description></description> + <requirements> + <requirement type="package" version="8.0.45">java-jdk</requirement> + </requirements> <command> <![CDATA[ ln -f -s "${input_bam.metadata.bam_index}" "${input_bam}.bai" && @@ -28,7 +31,7 @@ <param name="input_bam" value="input.bam" ftype="bam" /> <param name="require_proper_mate_pairing" value="1" /> <param name="read" value="0" /> - <output name="output" file="output.scidx" lines_diff="1" ftype="scidx" /> + <output name="output" file="output.scidx" lines_diff="1" ftype="scidx" compare="contains" /> </test> </tests> <help>