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annotate test-data/basil.vcf @ 1:77fc7640abc7 draft default tip

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planemo upload commit 49a2861a9b3480ea25f1e5526d2edf9dc8cb5334
author iuc
date Sun, 11 Aug 2024 21:06:14 +0000
parents e6ef29001647
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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1 ##fileformat=VCFv4.1
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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2 ##source=BASIL
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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3 ##reference=ref.fa
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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4 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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6 ##INFO=<ID=OEA_ONLY,Number=0,Type=Flag,Description="Breakpoint support by OEA signature only">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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7 ##ALT=<ID=INS,Description="Insertion of novel sequence">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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8 ##FORMAT=<ID=GSCORE,Number=1,Type=String,Description="Sum of Geometric score means (see BASIL documentation)">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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9 ##FORMAT=<ID=CLEFT,Number=1,Type=String,Description="Clipped alignments supporting call from left side.">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
iuc
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10 ##FORMAT=<ID=CRIGHT,Number=1,Type=String,Description="Clipped alignments supporting call from right side.">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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11 ##FORMAT=<ID=OEALEFT,Number=1,Type=String,Description="One-end anchored alignments supporting call from left side.">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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12 ##FORMAT=<ID=OEARIGHT,Number=1,Type=String,Description="One-end anchored alignments supporting call from right side.">
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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13 ##contig=<ID=1,length=10000>
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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14 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT individual
e6ef29001647 planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
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15 1 5001 site_0 T <INS> . PASS IMPRECISE;SVTYPE=INS GSCORE:CLEFT:CRIGHT:OEALEFT:OEARIGHT 46.4256:10:12:35:32