Mercurial > repos > iuc > basil
comparison test-data/basil.vcf @ 0:e6ef29001647 draft default tip
planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
| author | iuc |
|---|---|
| date | Thu, 30 May 2019 21:14:58 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:e6ef29001647 |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##source=BASIL | |
| 3 ##reference=ref.fa | |
| 4 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation"> | |
| 5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> | |
| 6 ##INFO=<ID=OEA_ONLY,Number=0,Type=Flag,Description="Breakpoint support by OEA signature only"> | |
| 7 ##ALT=<ID=INS,Description="Insertion of novel sequence"> | |
| 8 ##FORMAT=<ID=GSCORE,Number=1,Type=String,Description="Sum of Geometric score means (see BASIL documentation)"> | |
| 9 ##FORMAT=<ID=CLEFT,Number=1,Type=String,Description="Clipped alignments supporting call from left side."> | |
| 10 ##FORMAT=<ID=CRIGHT,Number=1,Type=String,Description="Clipped alignments supporting call from right side."> | |
| 11 ##FORMAT=<ID=OEALEFT,Number=1,Type=String,Description="One-end anchored alignments supporting call from left side."> | |
| 12 ##FORMAT=<ID=OEARIGHT,Number=1,Type=String,Description="One-end anchored alignments supporting call from right side."> | |
| 13 ##contig=<ID=1,length=10000> | |
| 14 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT individual | |
| 15 1 5001 site_0 T <INS> . PASS IMPRECISE;SVTYPE=INS GSCORE:CLEFT:CRIGHT:OEALEFT:OEARIGHT 46.4256:10:12:35:32 |