Mercurial > repos > iuc > bbgbigwig

annotate test-data/test5.gff3 @ 1:b95435276746 draft default tip

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planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit 24d62a0136f2c9adac56a247b498b373bb8d9e07
author iuc
date Sat, 15 Jun 2024 10:51:54 +0000
parents 498748c87252
children
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498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
diff changeset
1 ##gff-version 3
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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2 ##date Tue Jun 26 10:48:17 2007
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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3 ##sequence-region ctgA 1 50000
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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4 ##source gbrowse GFFToGalaxyDumper plugin
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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5 ##NOTE: All features dumped.
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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6 ctgA example my_feature 22132 24633 . + . ID=My_feature:f15
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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7 ctgA example my_feature 46990 48410 . - . ID=My_feature:f11
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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8 ctgA example my_feature 44705 47713 . - . ID=My_feature:f01
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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9 ctgA example my_feature 36649 40440 . - . ID=My_feature:f03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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10 ctgA example my_feature 23072 23185 . + . ID=My_feature:f14
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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11 ctgA example my_feature 37242 38653 . + . ID=My_feature:f04
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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12 ctgA example motif 37497 40559 . - . ID=Motif:m15;Note=7-transmembrane
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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13 ctgA example my_feature 36034 38167 . + . ID=My_feature:f09
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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14 ctgA example motif 28332 30033 . - . ID=Motif:m02;Note=HOX
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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15 ctgA example my_feature 4715 5968 . - . ID=My_feature:f05
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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16 ctgA example motif 48253 48366 . + . ID=Motif:m01;Note=WD40
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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17 ctgA example BAC 1000 20000 . . . ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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18 ctgA example right_end_read 19500 20000 . - . Parent=BAC:b101.2
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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19 ctgA example left_end_read 1000 1500 . + . Parent=BAC:b101.2
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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20 ctgA example motif 13801 14007 . - . ID=Motif:m05;Note=helix+loop+helix
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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21 ctgA example coding 1050 9000 . + . ID=mRNA:EDEN.1;Gene=EDEN
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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22 ctgA example CDS 1201 1500 . + 0 Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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23 ctgA example CDS 3000 3902 . + 0 Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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24 ctgA example CDS 5000 5500 . + 0 Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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25 ctgA example CDS 7000 7608 . + 0 Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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26 ctgA example processed_transcript 1050 9000 . + . ID=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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27 ctgA example 5'-UTR 1050 1200 . + . Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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28 ctgA example 3'-UTR 7609 9000 . + . Parent=mRNA:EDEN.1
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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29 ctgA est match 5410 7503 . - . ID=EST:agt830.3;Target=agt830.3+1+595
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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30 ctgA est HSP 7000 7503 . - . Parent=EST:agt830.3;Target=agt830.3+1+504
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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31 ctgA est HSP 5410 5500 . - . Parent=EST:agt830.3;Target=agt830.3+505+595
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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32 ctgA example motif 46012 48851 . + . ID=Motif:m09;Note=kinase
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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33 ctgA example match 6885 8999 . - . ID=Match:seg03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
parents:
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34 ctgA example HSP 8306 8999 . - . Parent=Match:seg03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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35 ctgA example HSP 8055 8080 . - . Parent=Match:seg03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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36 ctgA example HSP 7410 7737 . - . Parent=Match:seg03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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37 ctgA example HSP 6885 7241 . - . Parent=Match:seg03
498748c87252 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit fa9d44f1ca94a7522f21db6c7771764e1b8d92a5
iuc
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38 ctgA example my_feature 13280 16394 . + . ID=My_feature:f08