view test-data/test5.gff3 @ 1:b95435276746 draft default tip

planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit 24d62a0136f2c9adac56a247b498b373bb8d9e07
author iuc
date Sat, 15 Jun 2024 10:51:54 +0000
parents 498748c87252
children
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##gff-version 3
##date Tue Jun 26 10:48:17 2007
##sequence-region ctgA 1 50000
##source gbrowse GFFToGalaxyDumper plugin
##NOTE: All features dumped.
ctgA	example	my_feature	22132	24633	.	+	.	ID=My_feature:f15
ctgA	example	my_feature	46990	48410	.	-	.	ID=My_feature:f11
ctgA	example	my_feature	44705	47713	.	-	.	ID=My_feature:f01
ctgA	example	my_feature	36649	40440	.	-	.	ID=My_feature:f03
ctgA	example	my_feature	23072	23185	.	+	.	ID=My_feature:f14
ctgA	example	my_feature	37242	38653	.	+	.	ID=My_feature:f04
ctgA	example	motif	37497	40559	.	-	.	ID=Motif:m15;Note=7-transmembrane
ctgA	example	my_feature	36034	38167	.	+	.	ID=My_feature:f09
ctgA	example	motif	28332	30033	.	-	.	ID=Motif:m02;Note=HOX
ctgA	example	my_feature	4715	5968	.	-	.	ID=My_feature:f05
ctgA	example	motif	48253	48366	.	+	.	ID=Motif:m01;Note=WD40
ctgA	example	BAC	1000	20000	.	.	.	ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads
ctgA	example	right_end_read	19500	20000	.	-	.	Parent=BAC:b101.2
ctgA	example	left_end_read	1000	1500	.	+	.	Parent=BAC:b101.2
ctgA	example	motif	13801	14007	.	-	.	ID=Motif:m05;Note=helix+loop+helix
ctgA	example	coding	1050	9000	.	+	.	ID=mRNA:EDEN.1;Gene=EDEN
ctgA	example	CDS	1201	1500	.	+	0	Parent=mRNA:EDEN.1
ctgA	example	CDS	3000	3902	.	+	0	Parent=mRNA:EDEN.1
ctgA	example	CDS	5000	5500	.	+	0	Parent=mRNA:EDEN.1
ctgA	example	CDS	7000	7608	.	+	0	Parent=mRNA:EDEN.1
ctgA	example	processed_transcript	1050	9000	.	+	.	ID=mRNA:EDEN.1
ctgA	example	5'-UTR	1050	1200	.	+	.	Parent=mRNA:EDEN.1
ctgA	example	3'-UTR	7609	9000	.	+	.	Parent=mRNA:EDEN.1
ctgA	est	match	5410	7503	.	-	.	ID=EST:agt830.3;Target=agt830.3+1+595
ctgA	est	HSP	7000	7503	.	-	.	Parent=EST:agt830.3;Target=agt830.3+1+504
ctgA	est	HSP	5410	5500	.	-	.	Parent=EST:agt830.3;Target=agt830.3+505+595
ctgA	example	motif	46012	48851	.	+	.	ID=Motif:m09;Note=kinase
ctgA	example	match	6885	8999	.	-	.	ID=Match:seg03
ctgA	example	HSP	8306	8999	.	-	.	Parent=Match:seg03
ctgA	example	HSP	8055	8080	.	-	.	Parent=Match:seg03
ctgA	example	HSP	7410	7737	.	-	.	Parent=Match:seg03
ctgA	example	HSP	6885	7241	.	-	.	Parent=Match:seg03
ctgA	example	my_feature	13280	16394	.	+	.	ID=My_feature:f08