Mercurial > repos > iuc > bbtools_bbmerge
changeset 3:82ced0e47b9d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 1cd738ce63dc53cebf13439456e761ef63dc019c
| author | iuc |
|---|---|
| date | Fri, 12 Apr 2024 20:19:26 +0000 |
| parents | 6d084528a6f1 |
| children | 5d8b93c0731f |
| files | bbmerge.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/bbmerge.xml Sat Feb 10 17:55:55 2024 +0000 +++ b/bbmerge.xml Fri Apr 12 20:19:26 2024 +0000 @@ -39,7 +39,12 @@ ln -s '${read2}' '${read2_file}' && #end if -bbmerge.sh +if [[ "\${_JAVA_OPTIONS}" != *-Xmx* && "\${JAVA_TOOL_OPTIONS}" != *-Xmx* ]]; then + export _JAVA_OPTIONS="\${_JAVA_OPTIONS} -Xmx\${GALAXY_MEMORY_MB:-4096}m -Xms256m"; +fi && + +bbmerge.sh tmpdir="\$TMPDIR" t="\${GALAXY_SLOTS:-2}" + #### Input parameters #if str($input_type_cond.input_type) == 'single': in='${read1_file}'
--- a/macros.xml Sat Feb 10 17:55:55 2024 +0000 +++ b/macros.xml Fri Apr 12 20:19:26 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">39.06</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">22.01</token> <xml name="edam_ontology"> <edam_topics>