Mercurial > repos > iuc > bcftools_norm

changeset 2:d110fb275304 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6
author iuc
date Mon, 03 Oct 2016 12:16:45 -0400
parents 6556e7ae784e
children a01eacacfd88
files bcftools_norm.xml macros.xml
diffstat 2 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bcftools_norm.xml	Wed Jul 13 10:57:45 2016 -0400
+++ b/bcftools_norm.xml	Mon Oct 03 12:16:45 2016 -0400
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
     <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description>
     <macros>
         <token name="@EXECUTABLE@">norm</token>
@@ -94,7 +94,7 @@
             </param>
             <param name="strict_filter" type="boolean" truevalue="--strict-filter" falsevalue="" label="Strict Filter" 
                    help="When merging (-m+), merged site is PASS only if all sites being merged PASS" />
-            <param name="site_win" type="integer" label="Site Window" default="1000" optional="True" 
+            <param name="site_win" type="integer" label="Site Window" value="1000" optional="True" 
                    help="(-w, --site-win) Buffer for sorting lines which changed position during realignment" />
         </section>
 
--- a/macros.xml	Wed Jul 13 10:57:45 2016 -0400
+++ b/macros.xml	Mon Oct 03 12:16:45 2016 -0400
@@ -339,7 +339,6 @@
         </when>
         <when value="targets_file">
             <expand macro="macro_targets_file">
-               <optional>true</optional>
             </expand>
         </when>
     </conditional>