Mercurial > repos > iuc > bcftools_plugin_impute_info
comparison test-data/annots.vcf @ 0:981086ab0e3d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
| author | iuc |
|---|---|
| date | Wed, 06 Jul 2016 07:06:43 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:981086ab0e3d |
|---|---|
| 1 ##fileformat=VCFv4.1 | |
| 2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> | |
| 3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> | |
| 4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
| 5 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 6 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 8 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 9 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 10 ##FILTER=<ID=test,Description="Testing filter"> | |
| 11 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 12 ##contig=<ID=2,assembly=b37,length=249250621> | |
| 13 ##contig=<ID=3,assembly=b37,length=198022430> | |
| 14 ##contig=<ID=4,assembly=b37,length=191154276> | |
| 15 ##test=<ID=4,IE=5> | |
| 16 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 17 ##readme=AAAAAA | |
| 18 ##readme=BBBBBB | |
| 19 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> | |
| 20 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
| 21 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> | |
| 22 ##INFO=<ID=STR,Number=1,Type=String,Description="Test string type"> | |
| 23 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 24 1 3000150 id1 C T 99 PASS STR=id1;AN=4;AC=0 GT:GQ 0|0:999 0|0:999 | |
| 25 1 3000151 id2 C T 99 PASS STR=id2;AN=4;AC=0 GT:DP:GQ 0|0:99:999 0|0:99:999 | |
| 26 1 3062915 idIndel GTTT G 99 PASS DP4=1,2,3,4;AN=4;AC=0;INDEL;STR=testIndel GT:GQ:DP:GL 0|0:999:99:-99,-9,-99 0|0:999:99:-99,-9,-99 | |
| 27 1 3062915 idSNP G T,C 99 PASS STR=testSNP;TEST=5;DP4=1,2,3,4;AN=3;AC=0,0 GT:TT:GQ:DP:GL 0|0:9,9:999:99:-99,-9,-99,-99,-9,-99 0:9,9:999:99:-99,-9,-99 | |
| 28 1 3106154 id4 CAAA C 99 PASS STR=id4;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 29 1 3106154 id5 C CT 99 PASS STR=id5;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 30 1 3157410 id6 GA GC,G 99 PASS STR=id6;AN=4;AC=0 GT:GQ:DP 0|0:99:99 0|0:99:99 | |
| 31 1 3162006 id7 GAA GG 99 PASS STR=id7;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 32 1 3177144 id8 G T 99 PASS STR=id8;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 33 1 3177144 id9 G . 99 PASS STR=id9;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 34 1 3184885 id10 TAAAA TA,T 99 PASS STR=id10;AN=4;AC=0,0 GT:GQ:DP 0|0:99:99 0|0:99:99 | |
| 35 2 3199812 id11 G GTT,GT 99 PASS STR=id11;AN=4;AC=0,0 GT:GQ:DP 0|0:999:99 0|0:999:99 | |
| 36 3 3212016 id12 CTT C,CT 99 PASS STR=id12;AN=4;AC=0,0 GT:GQ:DP 0|0:99:99 0|0:99:99 | |
| 37 4 3258448 id13 TACACACAC T 99 PASS STR=id13;AN=4;AC=0 GT:GQ:DP 0|0:999:99 0|0:999:99 |