Mercurial > repos > iuc > bcftools_view
comparison bcftools_view.xml @ 21:abc3ced31cd1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 96c0663be587b73bdf09ddf060cb559f28f9eba7
| author | iuc |
|---|---|
| date | Thu, 12 Jan 2023 15:37:29 +0000 |
| parents | 3ca3de4e5291 |
| children |
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| 20:59fa8742285e | 21:abc3ced31cd1 |
|---|---|
| 242 <test> | 242 <test> |
| 243 <param name="input_file" ftype="vcf" value="view.vcf" /> | 243 <param name="input_file" ftype="vcf" value="view.vcf" /> |
| 244 <param name="known_or_novel" value="--novel" /> | 244 <param name="known_or_novel" value="--novel" /> |
| 245 <param name="private" value="--exclude-private" /> | 245 <param name="private" value="--exclude-private" /> |
| 246 <param name="samples" value="NA00003" /> | 246 <param name="samples" value="NA00003" /> |
| 247 <conditional name="regions"> | 247 <section name="sec_restrict"> |
| 248 <param name="regions_src" value="regions"/> | 248 <conditional name="regions"> |
| 249 <repeat name="regions"> | 249 <param name="regions_src" value="regions"/> |
| 250 <param name="chrom" value="Y" /> | 250 <repeat name="regions"> |
| 251 <param name="start" value="20" /> | 251 <param name="chrom" value="Y" /> |
| 252 </repeat> | 252 <param name="start" value="20" /> |
| 253 </conditional> | 253 </repeat> |
| 254 </conditional> | |
| 255 </section> | |
| 254 <param name="output_type" value="v" /> | 256 <param name="output_type" value="v" /> |
| 255 <output name="output_file"> | 257 <output name="output_file"> |
| 256 <assert_contents> | 258 <assert_contents> |
| 257 <has_text text="8657215" /> | 259 <has_text text="8657215" /> |
| 258 <not_has_text text="rs6111385" /> | 260 <not_has_text text="rs6111385" /> |
| 266 <param name="input_file" ftype="vcf" value="view.vcf" /> | 268 <param name="input_file" ftype="vcf" value="view.vcf" /> |
| 267 <param name="known_or_novel" value="--known" /> | 269 <param name="known_or_novel" value="--known" /> |
| 268 <param name="private" value="--exclude-private" /> | 270 <param name="private" value="--exclude-private" /> |
| 269 <param name="apply_filters" value="PASS" /> | 271 <param name="apply_filters" value="PASS" /> |
| 270 <param name="samples" value="NA00003" /> | 272 <param name="samples" value="NA00003" /> |
| 271 <param name="regions" value="20,Y" /> | 273 <section name="sec_restrict"> |
| 272 <param name="output_type" value="v" /> | 274 <conditional name="regions"> |
| 273 <output name="output_file"> | 275 <param name="regions_src" value="regions"/> |
| 274 <assert_contents> | 276 <repeat name="regions"> |
| 275 <has_text text="rs6111385" /> | 277 <param name="chrom" value="Y" /> |
| 278 <param name="start" value="20" /> | |
| 279 </repeat> | |
| 280 </conditional> | |
| 281 </section> | |
| 282 <param name="output_type" value="v" /> | |
| 283 <output name="output_file"> | |
| 284 <assert_contents> | |
| 285 <has_text text="Minimum number of alternate bases" /> | |
| 276 <not_has_text text="8657215" /> | 286 <not_has_text text="8657215" /> |
| 277 </assert_contents> | 287 </assert_contents> |
| 278 </output> | 288 </output> |
| 279 </test> | 289 </test> |
| 280 <test> | 290 <test> |