Mercurial > repos > iuc > bcftools_view
changeset 2:cc016cb332cd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6
| author | iuc |
|---|---|
| date | Mon, 03 Oct 2016 12:21:48 -0400 |
| parents | 3e4c1bb306e9 |
| children | cde34352778e |
| files | bcftools_view.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/bcftools_view.xml Wed Jul 13 11:01:08 2016 -0400 +++ b/bcftools_view.xml Mon Oct 03 12:21:48 2016 -0400 @@ -116,9 +116,9 @@ help="Trim alternate alleles not seen in the subset" /> </section> <section name="sec_filter" expanded="false" title="Filter Options"> - <param name="min_ac" type="integer" label="Min Ac" default="nref" optional="True" + <param name="min_ac" type="integer" label="Min Ac" optional="True" help="(-c --min-ac) Minimum count for non-reference (nref), 1st alternate (alt1), least frequent (minor), most frequent (major) or sum of all but most frequent (nonmajor) alleles" /> - <param name="max_ac" type="integer" label="Max Ac" default="nref" optional="True" + <param name="max_ac" type="integer" label="Max Ac" optional="True" help="(-C --max-ac) Maximum count for non-reference (nref), 1st alternate (alt1), least frequent (minor), most frequent (major) or sum of all but most frequent (nonmajor) alleles" /> <param name="select_genotype" type="select"> <option value="__none__" selected="True">No selection</option> @@ -163,9 +163,9 @@ </param> <!-- TODO optional select for type: nref,alt1,minor,major,sum --> - <param name="min_af" type="float" label="Min Af" default="nref" optional="True" + <param name="min_af" type="float" label="Min Af" optional="True" help="(-q) Minimum frequency for non-reference (nref), 1st alternate (alt1), least frequent (minor), most frequent (major) or sum of all but most frequent (nonmajor) alleles" /> - <param name="max_af" type="float" label="Max Af" default="nref" optional="True" + <param name="max_af" type="float" label="Max Af" optional="True" help="(-Q) Maximum frequency for non-reference (nref), 1st alternate (alt1), least frequent (minor), most frequent (major) or sum of all but most frequent (nonmajor) alleles" /> <param name="uncalled" type="select" label="filter on genotype uncalled" optional="true"> @@ -191,7 +191,7 @@ <option value="--no-header">(-h) no-header</option> <option value="--header-only">(-H) header-only</option> </param> - <param name="compression_level" type="integer" min="0" max="9" label="Compression Level" default="-1" optional="True" + <param name="compression_level" type="integer" min="0" max="9" label="Compression Level" optional="True" help="Compression level: 0 uncompressed, 1 best speed, 9 best compression" /> <param name="invert_targets_file" type="boolean" truevalue="^" falsevalue="" label="Invert Targets File" help="Inverts the query/filtering applied by Targets File" />