annotate test-data/EGAF00005572753.json @ 0:ba4ed464f8b6 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2 commit dcaf8046840f163143075b276dd75909d344ec3a

{
  "phenopacket": {
    "id": "P0007503",
    "subject": {
      "id": "P0007503",
      "dateOfBirth": "unknown-01-01T00:00:00Z",
      "sex": "FEMALE"
    },
    "phenotypicFeatures": [
      {
        "type": {
          "id": "HP:0000529",
          "label": "Progressive visual loss"
        }
      },
      {
        "type": {
          "id": "HP:0000575",
          "label": "Scotoma"
        }
      },
      {
        "type": {
          "id": "HP:0007703",
          "label": "Abnormality of retinal pigmentation"
        }
      },
      {
        "type": {
          "id": "HP:0008002",
          "label": "Abnormality of macular pigmentation"
        }
      },
      {
        "type": {
          "id": "HP:0012508",
          "label": "Metamorphopsia"
        }
      }
    ],
    "diseases": [],
    "genes": [],
    "variants": [],
    "meta_data": {
      "created": "2021-04-21T09:39:45.571Z",
      "resources": [
        {
          "id": "hp",
          "name": "Human Phenotype Ontology",
          "url": "http://purl.obolibrary.org/obo/hp.owl",
          "version": "2020-12-07",
          "namespacePrefix": "HP",
          "iriPrefix": "http://purl.obolibrary.org/obo/HP_"
        },
        {
          "id": "orphanet",
          "name": "Orphanet Rare Disease Ontology",
          "url": "http://orpha.net/ontology/ORDO_en_3.1.owl",
          "version": "3.1",
          "namespacePrefix": "Orphanet",
          "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_"
        },
        {
          "id": "hgnc",
          "name": "HUGO Gene Nomenclature Committee",
          "url": "https://www.genenames.org",
          "version": "2021-01-13",
          "namespacePrefix": "HGNC",
          "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
        },
        {
          "id": "mim",
          "name": "Online Mendelian Inheritance in Man",
          "url": "https://omim.org/",
          "version": "2021-01-21",
          "namespacePrefix": "OMIM",
          "iriPrefix": "https://omim.org/entry/"
        }
      ]
    }
  },
  "interpretation": {
    "id": "P0007503",
    "resolutionStatus": "UNSOLVED",
    "phenopacket": {
      "id": "P0007503",
      "subject": {
        "id": "P0007503",
        "dateOfBirth": "unknown-01-01T00:00:00Z",
        "sex": "FEMALE"
      },
      "phenotypicFeatures": [
        {
          "type": {
            "id": "HP:0000529",
            "label": "Progressive visual loss"
          }
        },
        {
          "type": {
            "id": "HP:0000575",
            "label": "Scotoma"
          }
        },
        {
          "type": {
            "id": "HP:0007703",
            "label": "Abnormality of retinal pigmentation"
          }
        },
        {
          "type": {
            "id": "HP:0008002",
            "label": "Abnormality of macular pigmentation"
          }
        },
        {
          "type": {
            "id": "HP:0012508",
            "label": "Metamorphopsia"
          }
        }
      ],
      "diseases": [],
      "genes": [],
      "variants": [],
      "meta_data": {
        "created": "2021-04-21T09:39:45.571Z",
        "resources": [
          {
            "id": "hp",
            "name": "Human Phenotype Ontology",
            "url": "http://purl.obolibrary.org/obo/hp.owl",
            "version": "2020-12-07",
            "namespacePrefix": "HP",
            "iriPrefix": "http://purl.obolibrary.org/obo/HP_"
          },
          {
            "id": "orphanet",
            "name": "Orphanet Rare Disease Ontology",
            "url": "http://orpha.net/ontology/ORDO_en_3.1.owl",
            "version": "3.1",
            "namespacePrefix": "Orphanet",
            "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_"
          },
          {
            "id": "hgnc",
            "name": "HUGO Gene Nomenclature Committee",
            "url": "https://www.genenames.org",
            "version": "2021-01-13",
            "namespacePrefix": "HGNC",
            "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
          },
          {
            "id": "mim",
            "name": "Online Mendelian Inheritance in Man",
            "url": "https://omim.org/",
            "version": "2021-01-21",
            "namespacePrefix": "OMIM",
            "iriPrefix": "https://omim.org/entry/"
          }
        ]
      }
    },
    "diagnosis": [],
    "meta_data": {}
  }
}