Mercurial > repos > iuc > beagle
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit 665be55fed0fde169c24f17dd2867b2257b638d8
author | iuc |
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date | Sun, 22 Jan 2023 12:42:41 +0000 |
parents | 553b27c30eb8 |
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beagle.21Apr21.304.jar (version 5.2) Copyright (C) 2014-2021 Brian L. Browning Enter "java -jar beagle.21Apr21.304.jar" to list command line argument Start time: 08:46 PM GMT on 26 Jun 2021 Command line: java -Xmx989m -jar beagle.21Apr21.304.jar gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat chrom=22:100- ne=1000000 window=40.0 overlap=2.0 seed=1 err=0.02 burnin=3 iterations=12 phase-states=280 impute=true imp-states=1600 imp-segment=6.0 imp-step=0.1 cluster=0.005 ap=false gp=false out=out nthreads=1 No genetic map is specified: using 1 cM = 1 Mb Reference samples: 0 Study samples: 191 Window 1 [22:20000086-20016908] Reference markers: 223 Study markers: 223 Burnin iteration 1: 1 second Burnin iteration 2: 0 seconds Burnin iteration 3: 0 seconds Phasing iteration 1: 0 seconds Phasing iteration 2: 0 seconds Phasing iteration 3: 0 seconds Phasing iteration 4: 0 seconds Phasing iteration 5: 0 seconds Phasing iteration 6: 0 seconds Phasing iteration 7: 0 seconds Phasing iteration 8: 0 seconds Phasing iteration 9: 0 seconds Phasing iteration 10: 0 seconds Phasing iteration 11: 0 seconds Phasing iteration 12: 0 seconds Cumulative Statistics: Study markers: 223 Haplotype phasing time: 2 seconds Total time: 3 seconds End time: 08:46 PM GMT on 26 Jun 2021 beagle.21Apr21.304.jar finished