Mercurial > repos > iuc > bedtools
comparison bedpeToBam.xml @ 43:07e8b80f278c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
| author | iuc |
|---|---|
| date | Fri, 01 Apr 2022 19:02:51 +0000 |
| parents | 7ab85ac5f64b |
| children | 64e2edfe7a2c |
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| 42:841fb4dc3ab3 | 43:07e8b80f278c |
|---|---|
| 1 <tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@" profile="@PROFILE@"> | 1 <tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> |
| 2 <description>converter</description> | 2 <description>converter</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="bio_tools" /> | 6 <expand macro="bio_tools" /> |
| 11 <expand macro="stdio" /> | 11 <expand macro="stdio" /> |
| 12 <command><![CDATA[ | 12 <command><![CDATA[ |
| 13 bedtools bedpetobam | 13 bedtools bedpetobam |
| 14 -mapq $mapq | 14 -mapq $mapq |
| 15 -i '$input' | 15 -i '$input' |
| 16 -g @GENOME_FILE@ | 16 @GENOME_FILE@ |
| 17 > '$output' | 17 > '$output' |
| 18 ]]></command> | 18 ]]></command> |
| 19 <inputs> | 19 <inputs> |
| 20 <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> | 20 <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> |
| 21 <expand macro="input_conditional_genome_file" /> | 21 <expand macro="input_conditional_genome_file" /> |