comparison sortBed.xml @ 44:589e7e57fd6d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 03a91f6c42c75dc36d09505c2e6a2236178e4695

43:07e8b80f278c

<tool id="bedtools_sortbed" name="bedtools SortBED" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>order the intervals</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />

            <option value="-chrThenSizeA">chromosome, then by feature size (asc).</option>
            <option value="-chrThenSizeD">chromosome, then by feature size (desc).</option>
            <option value="-chrThenScoreA">chromosome, then by score (asc).</option>
            <option value="-chrThenScoreD">chromosome, then by score (desc).</option>
        </param>
        <expand macro="input_conditional_genome_file" help="Sort according to the chromosomes declared in a genome file" />
    </inputs>
    <outputs>
        <data name="output" format_source="input" metadata_source="input" label="SortBed on ${input.name}"/>
    </outputs>
    <tests>

44:589e7e57fd6d

<tool id="bedtools_sortbed" name="bedtools SortBED" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>order the intervals</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />

            <option value="-chrThenSizeA">chromosome, then by feature size (asc).</option>
            <option value="-chrThenSizeD">chromosome, then by feature size (desc).</option>
            <option value="-chrThenScoreA">chromosome, then by score (asc).</option>
            <option value="-chrThenScoreD">chromosome, then by score (desc).</option>
        </param>
        <expand macro="input_conditional_genome_file" optional="true" help="Sort according to the chromosomes declared in a genome file" />
    </inputs>
    <outputs>
        <data name="output" format_source="input" metadata_source="input" label="SortBed on ${input.name}"/>
    </outputs>
    <tests>