Mercurial > repos > iuc > bedtools
comparison clusterBed.xml @ 11:7308cc546a36 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author | iuc |
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date | Mon, 17 Oct 2016 10:13:35 -0400 |
parents | 607c0576c6ab |
children | 95a3b2c25bd1 |
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10:c78cf6fe3018 | 11:7308cc546a36 |
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8 <command> | 8 <command> |
9 <![CDATA[ | 9 <![CDATA[ |
10 bedtools cluster | 10 bedtools cluster |
11 $strand | 11 $strand |
12 -d $distance | 12 -d $distance |
13 -i $inputA | 13 -i '$inputA' |
14 > $output | 14 > '$output' |
15 ]]> | 15 ]]> |
16 </command> | 16 </command> |
17 <inputs> | 17 <inputs> |
18 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> | 18 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> |
19 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." | 19 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." |
20 help="That is, only cluster features that are the same strand. By default, this is disabled." /> | 20 help="That is, only cluster features that are the same strand. By default, this is disabled." /> |
21 <param name="distance" type="integer" value="0" | 21 <param name="distance" type="integer" value="0" |
22 label="Maximum distance between features allowed for features to be clustered" | 22 label="Maximum distance between features allowed for features to be clustered" |
23 help="Default is 0. That is, overlapping and/or book-ended features are clustered." /> | 23 help="Default is 0. That is, overlapping and/or book-ended features are clustered." /> |
24 </inputs> | 24 </inputs> |
25 <outputs> | 25 <outputs> |
26 <data format_source="inputA" name="output" metadata_source="inputA"/> | 26 <data format_source="inputA" name="output" metadata_source="inputA"/> |
27 </outputs> | 27 </outputs> |