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diff clusterBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 95a3b2c25bd1
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--- a/clusterBed.xml	Mon Oct 03 07:36:08 2016 -0400
+++ b/clusterBed.xml	Mon Oct 17 10:13:35 2016 -0400
@@ -10,16 +10,16 @@
         bedtools cluster
         $strand
         -d $distance
-        -i $inputA
-        > $output
+        -i '$inputA'
+        > '$output'
 ]]>
     </command>
     <inputs>
         <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
-        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." 
+        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness."
             help="That is, only cluster features that are the same strand. By default, this is disabled." />
-        <param name="distance" type="integer" value="0" 
-            label="Maximum distance between features allowed for features to be clustered" 
+        <param name="distance" type="integer" value="0"
+            label="Maximum distance between features allowed for features to be clustered"
             help="Default is 0. That is, overlapping and/or book-ended features are clustered." />
     </inputs>
     <outputs>