Mercurial > repos > iuc > bedtools

comparison jaccardBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 95a3b2c25bd1
comparison
equal deleted inserted replaced
10:c78cf6fe3018 11:7308cc546a36
10 bedtools jaccard 10 bedtools jaccard
11 $strand 11 $strand
12 $split 12 $split
13 $reciprocal 13 $reciprocal
14 -f $overlap 14 -f $overlap
15 -a $inputA 15 -a '$inputA'
16 -b $inputB 16 -b '$inputB'
17 > $output 17 > '$output'
18 ]]> 18 ]]>
19 </command> 19 </command>
20 <inputs> 20 <inputs>
21 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 21 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
22 <param format="bed,vcf,gff,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/> 22 <param format="bed,vcf,gff,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/>
23 <expand macro="overlap" /> 23 <expand macro="overlap" />
24 <expand macro="reciprocal" /> 24 <expand macro="reciprocal" />
25 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" 25 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue=""
26 label="Force strandedness" 26 label="Force strandedness"
27 help="That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. (-s)" /> 27 help="That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. (-s)" />
28 <expand macro="strand2" /> 28 <expand macro="strand2" />
29 <expand macro="split" /> 29 <expand macro="split" />
30 </inputs> 30 </inputs>