comparison unionBedGraphs.xml @ 41:7ab85ac5f64b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"

40:a68aa6c1204a

<tool id="bedtools_unionbedgraph" name="bedtools Merge BedGraph files" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>combines coverage intervals from multiple BEDGRAPH files</description>
    <expand macro="bio_tools" />
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
unionBedGraphs
$header

        <test>
            <param name="tag_select" value="tag" />
            <param name="inputs" value="unionBedGraphs1.bg,unionBedGraphs2.bg,unionBedGraphs3.bg" ftype="bedgraph" />
            <param name="empty_selector" value="-empty" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="unionBedGraphs1.len" />
            <output name="output" file="unionBedGraphs_result3.bg" ftype="bedgraph" />
        </test>
        <test>
            <param name="tag_select" value="custom" />
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs1.bg" />
                <param name="custom_name" value="first" />
            </repeat>
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs2.bg" />
                <param name="custom_name" value="second" />
            </repeat>
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs3.bg" />
                <param name="custom_name" value="third" />
            </repeat>
            <param name="empty_selector" value="-empty" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="unionBedGraphs1.len" />
            <output name="output" file="unionBedGraphs_result4.bg" ftype="bedgraph" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**

41:7ab85ac5f64b

<tool id="bedtools_unionbedgraph" name="bedtools Merge BedGraph files" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>combines coverage intervals from multiple BEDGRAPH files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
unionBedGraphs
$header

        <test>
            <param name="tag_select" value="tag" />
            <param name="inputs" value="unionBedGraphs1.bg,unionBedGraphs2.bg,unionBedGraphs3.bg" ftype="bedgraph" />
            <param name="empty_selector" value="-empty" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="unionBedGraphs1.len" ftype="tabular" />
            <output name="output" file="unionBedGraphs_result3.bg" ftype="bedgraph" />
        </test>
        <test>
            <param name="tag_select" value="custom" />
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs1.bg" ftype="bedgraph" />
                <param name="custom_name" value="first" />
            </repeat>
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs2.bg" ftype="bedgraph" />
                <param name="custom_name" value="second" />
            </repeat>
            <repeat name="bedgraphs">
                <param name="input" value="unionBedGraphs3.bg" ftype="bedgraph" />
                <param name="custom_name" value="third" />
            </repeat>
            <param name="empty_selector" value="-empty" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="unionBedGraphs1.len" ftype="tabular" />
            <output name="output" file="unionBedGraphs_result4.bg" ftype="bedgraph" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**