diff unionBedGraphs.xml @ 41:7ab85ac5f64b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"

--- a/unionBedGraphs.xml	Thu Sep 09 13:04:07 2021 +0000
+++ b/unionBedGraphs.xml	Thu Nov 04 11:36:55 2021 +0000
@@ -1,9 +1,9 @@
 <tool id="bedtools_unionbedgraph" name="bedtools Merge BedGraph files" version="@TOOL_VERSION@" profile="@PROFILE@">
     <description>combines coverage intervals from multiple BEDGRAPH files</description>
-    <expand macro="bio_tools" />
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools" />
     <expand macro="requirements" />
     <expand macro="stdio" />
     <command><![CDATA[
@@ -83,26 +83,26 @@
             <param name="inputs" value="unionBedGraphs1.bg,unionBedGraphs2.bg,unionBedGraphs3.bg" ftype="bedgraph" />
             <param name="empty_selector" value="-empty" />
             <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="unionBedGraphs1.len" />
+            <param name="genome" value="unionBedGraphs1.len" ftype="tabular" />
             <output name="output" file="unionBedGraphs_result3.bg" ftype="bedgraph" />
         </test>
         <test>
             <param name="tag_select" value="custom" />
             <repeat name="bedgraphs">
-                <param name="input" value="unionBedGraphs1.bg" />
+                <param name="input" value="unionBedGraphs1.bg" ftype="bedgraph" />
                 <param name="custom_name" value="first" />
             </repeat>
             <repeat name="bedgraphs">
-                <param name="input" value="unionBedGraphs2.bg" />
+                <param name="input" value="unionBedGraphs2.bg" ftype="bedgraph" />
                 <param name="custom_name" value="second" />
             </repeat>
             <repeat name="bedgraphs">
-                <param name="input" value="unionBedGraphs3.bg" />
+                <param name="input" value="unionBedGraphs3.bg" ftype="bedgraph" />
                 <param name="custom_name" value="third" />
             </repeat>
             <param name="empty_selector" value="-empty" />
             <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="unionBedGraphs1.len" />
+            <param name="genome" value="unionBedGraphs1.len" ftype="tabular" />
             <output name="output" file="unionBedGraphs_result4.bg" ftype="bedgraph" />
         </test>
     </tests>