Mercurial > repos > iuc > bedtools
comparison unionBedGraphs.xml @ 41:7ab85ac5f64b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"
author | iuc |
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date | Thu, 04 Nov 2021 11:36:55 +0000 |
parents | 3e38c9b3214f |
children |
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40:a68aa6c1204a | 41:7ab85ac5f64b |
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1 <tool id="bedtools_unionbedgraph" name="bedtools Merge BedGraph files" version="@TOOL_VERSION@" profile="@PROFILE@"> | 1 <tool id="bedtools_unionbedgraph" name="bedtools Merge BedGraph files" version="@TOOL_VERSION@" profile="@PROFILE@"> |
2 <description>combines coverage intervals from multiple BEDGRAPH files</description> | 2 <description>combines coverage intervals from multiple BEDGRAPH files</description> |
3 <expand macro="bio_tools" /> | |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
6 <expand macro="bio_tools" /> | |
7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
8 <expand macro="stdio" /> | 8 <expand macro="stdio" /> |
9 <command><![CDATA[ | 9 <command><![CDATA[ |
10 unionBedGraphs | 10 unionBedGraphs |
11 $header | 11 $header |
81 <test> | 81 <test> |
82 <param name="tag_select" value="tag" /> | 82 <param name="tag_select" value="tag" /> |
83 <param name="inputs" value="unionBedGraphs1.bg,unionBedGraphs2.bg,unionBedGraphs3.bg" ftype="bedgraph" /> | 83 <param name="inputs" value="unionBedGraphs1.bg,unionBedGraphs2.bg,unionBedGraphs3.bg" ftype="bedgraph" /> |
84 <param name="empty_selector" value="-empty" /> | 84 <param name="empty_selector" value="-empty" /> |
85 <param name="genome_file_opts_selector" value="hist" /> | 85 <param name="genome_file_opts_selector" value="hist" /> |
86 <param name="genome" value="unionBedGraphs1.len" /> | 86 <param name="genome" value="unionBedGraphs1.len" ftype="tabular" /> |
87 <output name="output" file="unionBedGraphs_result3.bg" ftype="bedgraph" /> | 87 <output name="output" file="unionBedGraphs_result3.bg" ftype="bedgraph" /> |
88 </test> | 88 </test> |
89 <test> | 89 <test> |
90 <param name="tag_select" value="custom" /> | 90 <param name="tag_select" value="custom" /> |
91 <repeat name="bedgraphs"> | 91 <repeat name="bedgraphs"> |
92 <param name="input" value="unionBedGraphs1.bg" /> | 92 <param name="input" value="unionBedGraphs1.bg" ftype="bedgraph" /> |
93 <param name="custom_name" value="first" /> | 93 <param name="custom_name" value="first" /> |
94 </repeat> | 94 </repeat> |
95 <repeat name="bedgraphs"> | 95 <repeat name="bedgraphs"> |
96 <param name="input" value="unionBedGraphs2.bg" /> | 96 <param name="input" value="unionBedGraphs2.bg" ftype="bedgraph" /> |
97 <param name="custom_name" value="second" /> | 97 <param name="custom_name" value="second" /> |
98 </repeat> | 98 </repeat> |
99 <repeat name="bedgraphs"> | 99 <repeat name="bedgraphs"> |
100 <param name="input" value="unionBedGraphs3.bg" /> | 100 <param name="input" value="unionBedGraphs3.bg" ftype="bedgraph" /> |
101 <param name="custom_name" value="third" /> | 101 <param name="custom_name" value="third" /> |
102 </repeat> | 102 </repeat> |
103 <param name="empty_selector" value="-empty" /> | 103 <param name="empty_selector" value="-empty" /> |
104 <param name="genome_file_opts_selector" value="hist" /> | 104 <param name="genome_file_opts_selector" value="hist" /> |
105 <param name="genome" value="unionBedGraphs1.len" /> | 105 <param name="genome" value="unionBedGraphs1.len" ftype="tabular" /> |
106 <output name="output" file="unionBedGraphs_result4.bg" ftype="bedgraph" /> | 106 <output name="output" file="unionBedGraphs_result4.bg" ftype="bedgraph" /> |
107 </test> | 107 </test> |
108 </tests> | 108 </tests> |
109 <help><![CDATA[ | 109 <help><![CDATA[ |
110 **What it does** | 110 **What it does** |