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comparison expandBed.xml @ 34:dde39ba9c031 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
author iuc
date Mon, 29 Apr 2019 05:55:48 -0400
parents 4f7a5ccd2ae9
children 3e38c9b3214f
comparison
equal deleted inserted replaced
33:87ee588b3d45 34:dde39ba9c031
1 <tool id="bedtools_expandbed" name="bedtools ExpandBed" version="@WRAPPER_VERSION@"> 1 <tool id="bedtools_expandbed" name="bedtools ExpandBed" version="@TOOL_VERSION@">
2 <description>replicate lines based on lists of values in columns</description> 2 <description>replicate lines based on lists of values in columns</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command><![CDATA[
9 <![CDATA[ 9 bedtools expand
10 bedtools expand 10 -c '${cols}'
11 -c "${cols}" 11 -i '${input}'
12 -i "${input}" 12 > '${output}'
13 > "${output}" 13 ]]></command>
14 ]]>
15 </command>
16 <inputs> 14 <inputs>
17 <param format="@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> 15 <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
18 <expand macro="choose_columns" /> 16 <expand macro="choose_columns" />
19 </inputs> 17 </inputs>
20 <outputs> 18 <outputs>
21 <data name="output" metadata_source="input" format_source="input" /> 19 <data name="output" format_source="input" metadata_source="input" />
22 </outputs> 20 </outputs>
23 <tests> 21 <tests>
24 <test> 22 <test>
25 <param name="input" value="expandBed1.bed" ftype="bed" /> 23 <param name="input" value="expandBed1.bed" ftype="bed" />
26 <param name="cols" value="5"/> 24 <param name="cols" value="5"/>
30 <param name="input" value="expandBed1.bed" ftype="bed" /> 28 <param name="input" value="expandBed1.bed" ftype="bed" />
31 <param name="cols" value="4,5"/> 29 <param name="cols" value="4,5"/>
32 <output name="output" file="expandBed_result2.bed" ftype="bed" /> 30 <output name="output" file="expandBed_result2.bed" ftype="bed" />
33 </test> 31 </test>
34 </tests> 32 </tests>
35 <help> 33 <help><![CDATA[
36 <![CDATA[
37 **What it does** 34 **What it does**
38 35
39 Replicate lines in a file based on columns of comma-separated values. 36 Replicate lines in a file based on columns of comma-separated values.
40 37
41 @REFERENCES@ 38 @REFERENCES@
42 ]]> 39 ]]></help>
43 </help>
44 <expand macro="citations" /> 40 <expand macro="citations" />
45 </tool> 41 </tool>