Mercurial > repos > iuc > bedtools
view expandBed.xml @ 32:4f7a5ccd2ae9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit fc3616bd1463afef9681cd7c431ac29f79e37e74
author | iuc |
---|---|
date | Tue, 11 Dec 2018 14:01:26 -0500 |
parents | 95a3b2c25bd1 |
children | dde39ba9c031 |
line wrap: on
line source
<tool id="bedtools_expandbed" name="bedtools ExpandBed" version="@WRAPPER_VERSION@"> <description>replicate lines based on lists of values in columns</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="stdio" /> <command> <![CDATA[ bedtools expand -c "${cols}" -i "${input}" > "${output}" ]]> </command> <inputs> <param format="@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> <expand macro="choose_columns" /> </inputs> <outputs> <data name="output" metadata_source="input" format_source="input" /> </outputs> <tests> <test> <param name="input" value="expandBed1.bed" ftype="bed" /> <param name="cols" value="5"/> <output name="output" file="expandBed_result1.bed" ftype="bed" /> </test> <test> <param name="input" value="expandBed1.bed" ftype="bed" /> <param name="cols" value="4,5"/> <output name="output" file="expandBed_result2.bed" ftype="bed" /> </test> </tests> <help> <![CDATA[ **What it does** Replicate lines in a file based on columns of comma-separated values. @REFERENCES@ ]]> </help> <expand macro="citations" /> </tool>