Mercurial > repos > iuc > bedtools
diff intersectBed.xml @ 28:6283d16e40ed draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 393e1fef41cfb7e28005a98fd5043a3f42347686
author | iuc |
---|---|
date | Sun, 24 Jun 2018 11:52:38 -0400 |
parents | 95a3b2c25bd1 |
children | 4f7a5ccd2ae9 |
line wrap: on
line diff
--- a/intersectBed.xml Tue May 15 14:52:10 2018 -0400 +++ b/intersectBed.xml Sun Jun 24 11:52:38 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.1"> +<tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.2"> <description>find overlapping intervals in various ways</description> <macros> <import>macros.xml</import> @@ -9,6 +9,10 @@ <![CDATA[ #set modes = ' '.join( str($overlap_mode).split(',') ) + #if $modes == "None": + #set modes = '' + #end if + bedtools intersect #if $inputA.is_of_type('bam'): -abam '${inputA}'