Mercurial > repos > iuc > bedtools

diff annotateBed.xml @ 26:95a3b2c25bd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:46 -0400
parents 7308cc546a36
children 4f7a5ccd2ae9
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--- a/annotateBed.xml	Fri Apr 20 05:30:23 2018 -0400
+++ b/annotateBed.xml	Thu Apr 26 17:02:46 2018 -0400
@@ -33,7 +33,7 @@
 ]]>
     </command>
     <inputs>
-        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file" />
+        <param format="@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file" />
         <!-- Additional files, if the user needs more -->
          <conditional name="names">
             <param name="names_select" type="select" label="Specify names for each file">
@@ -73,7 +73,7 @@
 <![CDATA[
 **What it does**
 
-bedtools annotate, well, annotates one BED/VCF/GFF file with the coverage and number of overlaps observed from multiple other BED/VCF/GFF files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command.
+bedtools annotate, well, annotates one @STD_BEDTOOLS_INPUT_LABEL@ file with the coverage and number of overlaps observed from multiple other @STD_BEDTOOLS_INPUT_LABEL@ files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command.
 
 @REFERENCES@
 ]]>