Mercurial > repos > iuc > biom_add_metadata
comparison biom_add_metadata.xml @ 8:6ef0b5664c69 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit 4d77c1e4bd9f6876ee338858a8cd4c7e9528d54c
| author | iuc |
|---|---|
| date | Wed, 13 Sep 2023 18:53:16 +0000 |
| parents | a3b86937ead6 |
| children | 3b6f97e7094c |
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| 7:0b3c3ad92827 | 8:6ef0b5664c69 |
|---|---|
| 36 #end if | 36 #end if |
| 37 $output_as_json | 37 $output_as_json |
| 38 ]]> | 38 ]]> |
| 39 </command> | 39 </command> |
| 40 <inputs> | 40 <inputs> |
| 41 <param name="input_fp" argument="--input-fp" type="data" format="biom1" label="BIOM File"/> | 41 <param argument="--input-fp" type="data" format="biom1" label="BIOM File"/> |
| 42 <param name="sample_metadata_fp" argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" /> | 42 <param argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" /> |
| 43 <param name="observation_metadata_fp" argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/> | 43 <param argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/> |
| 44 <param name="sc_separated" argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" /> | 44 <param argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" /> |
| 45 <param name="sc_pipe_separated" argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/> | 45 <param argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/> |
| 46 <param name="int_fields" argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" /> | 46 <param argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" /> |
| 47 <param name="float_fields" argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" /> | 47 <param argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" /> |
| 48 <param name="sample_header" argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" /> | 48 <param argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" /> |
| 49 <param name="observation_header" argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" /> | 49 <param argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" /> |
| 50 <param name="output_as_json" argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" /> | 50 <param argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" /> |
| 51 </inputs> | 51 </inputs> |
| 52 <outputs> | 52 <outputs> |
| 53 <data format="biom1" name="output_fp"> | 53 <data format="biom1" name="output_fp"> |
| 54 <change_format> | 54 <change_format> |
| 55 <when input="${str( $output_as_json )}" value="" format="h5" /> | 55 <when input="${str( $output_as_json )}" value="" format="h5" /> |