Mercurial > repos > iuc > biscot
view test-data/xml_configuration_file.xmap @ 0:ef4b5ce71745 draft default tip
planemo upload for repository https://github.com/bgruening/iuc/tree/master/tools/biscot commit cce7b9b092030d3bb23a706ca3bf2dece9c20b5f
| author | iuc |
|---|---|
| date | Fri, 06 Jan 2023 22:10:44 +0000 |
| parents | |
| children |
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# hostname=6d61d934e61b # $ cd /HybridScaffold; /RefAligner/amd2/RefAligner -o /data/jwd03f/main/053/913/53913897/working/align_final/bionano_bppAdjust_cmap_ngs_fasta_BNGcontigs_HYBRID_SCAFFOLD -stdout -stderr -i /data/jwd03f/main/053/913/53913897/working/assignAlignType/assignAlignType_q.cmap -ref /data/jwd03f/main/053/913/53913897/working/align_final/step2.hybrid.cmap -maxmem 250 -maxthreads 24 -maxvirtmem 250 -RAmem 3 1 -res 2.9 -FP 0.6 -FN 0.06 -sf 0.20 -sd 0.0 -sr 0.01 -extend 1 -outlier 0.0001 -endoutlier 0.001 -PVendoutlier -deltaX 6 -deltaY 6 -xmapchim 12 -hashgen 5 7 2.4 1.5 0.05 5.0 1 1 4 -hash -hashdelta 26 10 46 -hashMultiMatch 30 10 -insertThreads 24 -nosplit 2 -biaswt 0 -T 1e-10 -S -1000 -indel -PVres 2 -rres 0.9 -MaxSE 0.5 -HSDrange 1.0 -outlierBC -xmapUnique 14 -AlignRes 2. -outlierExtend 6 24 -Kmax 6 -resEstimate -BestRef 1 -f -mres 0.9 # CompileDir= /home/users/sqa01/RefAlignerBuild/branches/12432.12463rel/12432.12463rel CompileCmd=/opt/gcc-9.3.0/bin/g++ -B/opt/binutils-2.34 -fopenmp -Ofast -march=znver2 -mavx2 -mfpmath=sse -DUSE_PFLOAT=1 -DUSE_RFLOAT=1 -DUSE_SSE=1 -DUSE_MFLOAT=1 -DUSE_EPOW=2 -I/home/users8/tanantharaman/sleef-081120/build/include -I/opt/glibc-2.31/include -DUSE_STATIC -freciprocal-math -fno-signed-zeros -fno-trapping-math -fno-tree-vectorize -mtune=znver2 -fno-lto-odr-type-merging -DRELEASE=1 -std=gnu++98 -Wl,--dynamic-linker=/opt/glibc-2.31/lib/ld-linux-x86-64.so.2 -Wl,--rpath=/opt/glibc-2.31/lib -Wl,--rpath=/opt/gcc-9.3.0/lib64 -lsleefinline -lrt -lmvec -L/home/users8/tanantharaman/sleef-081120/build/lib -L/opt/glibc-2.31/lib -L/opt/gcc-9.3.0/lib64 -static -static-libstdc++ -static-libgcc -s SVNversion=12463 $Header: http://svn.bnm.local:81/svn/Informatics/RefAligner/branches/12432/RefAligner.cpp 12458 2021-10-24 00:56:45Z tanantharaman $ # FLAGS: USE_SSE=1 USE_AVX=1 USE_MIC=0 USE_PFLOAT=1 USE_RFLOAT=1 USE_MFLOAT=1 USE_EPOW=2 DEBUG=1 VERB=1 # XMAP File Version: 0.2 # Label Channels: 1 # Reference Maps From: /data/jwd03f/main/053/913/53913897/working/align_final/bionano_bppAdjust_cmap_ngs_fasta_BNGcontigs_HYBRID_SCAFFOLD_r.cmap # Query Maps From: /data/jwd03f/main/053/913/53913897/working/align_final/bionano_bppAdjust_cmap_ngs_fasta_BNGcontigs_HYBRID_SCAFFOLD_q.cmap #h XmapEntryID QryContigID RefContigID QryStartPos QryEndPos RefStartPos RefEndPos Orientation Confidence HitEnum QryLen RefLen LabelChannel Alignment #f int int int float float float float string float string float float int string 1 4 1 20.0 715071.0 19489.5 743436.5 + 92.15 7M1D12M1D8M1D2M1D9M1D4M1D10M1D1M1D23M1D2M1D5M 715091.0 4753350.0 1 (3,1)(4,2)(5,3)(6,4)(7,5)(8,6)(9,7)(10,8)(11,8)(12,9)(13,10)(14,11)(15,12)(16,13)(17,14)(18,15)(19,16)(20,17)(21,18)(22,19)(24,20)(25,21)(26,22)(27,23)(28,24)(29,25)(30,26)(31,27)(33,28)(34,29)(35,30)(36,30)(37,31)(38,32)(39,33)(40,34)(41,35)(42,36)(43,37)(44,38)(45,39)(46,39)(47,40)(48,41)(49,42)(51,43)(52,44)(53,45)(54,46)(55,47)(56,48)(57,49)(58,50)(59,51)(60,52)(62,53)(63,54)(64,54)(65,55)(66,56)(67,57)(68,58)(69,59)(70,60)(71,61)(72,62)(73,63)(74,64)(75,65)(76,66)(77,67)(78,68)(79,69)(80,70)(81,71)(82,72)(83,73)(84,74)(85,75)(86,76)(87,77)(88,77)(89,78)(90,79)(91,79)(92,80)(93,81)(94,82)(95,83) 2 1 1 20.0 3855049.5 765981.0 4747257.5 + 455.85 10M1D5M1D8M1D5M1I1D16M2I3D1M1D6M1D1M1D19M1D6M1D27M1D8M1D14M1D10M1D3M1I1M1D1M1D4M1D2M1D13M1D1M1D1M2D3M1D3M1D1M1D21M1D9M1D4M4I2D4M1D5M1D5M1D2M1D2M4I11M1D6M1D3M1D3M1D5M1D1M3I1M1D12M1D7M1D9M12D11M1D3M1D6M1D2M1D1M1D3M1D2M1D4M1D7M1D11M1D6M1D1M3D1M2D9M2I1D9M1D1M1D2M12D5M1D6M1D1M1D10M1D1M1D2M1D20M1D6M1D4M1D4M1D2M1D4M1D1M1D2M1D3M 3879935.1 4753350.0 1 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