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comparison test-data/genome_results_metaeuk_auto/short_summary @ 16:bb935709506a draft

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planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
author iuc
date Thu, 12 Jan 2023 13:28:58 +0000
parents e4bd1e99bacf
children 2a5b8b9936bf
comparison
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15:41030a6c03b7 16:bb935709506a
1 # BUSCO version is: 5.3.1 1 # BUSCO version is: 5.4.4
2 # The lineage dataset is: eukaryota_odb10 (Creation date: 2020-09-10, number of genomes: 70, number of BUSCOs: 255) 2 # The lineage dataset is: eukaryota_odb10 (Creation date: 2020-09-10, number of genomes: 70, number of BUSCOs: 255)
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp5e3tdhzs/files/c/9/b/dataset_c9b61090-5a2d-4dd0-8fd1-d147a4e1573c.dat 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprqvmp912/files/000/dataset_34.dat
4 # BUSCO was run in mode: genome 4 # BUSCO was run in mode: euk_genome_met
5 # Gene predictor used: metaeuk 5 # Gene predictor used: metaeuk
6 6
7 ***** Results: ***** 7 ***** Results: *****
8 8
9 C:0.4%[S:0.4%,D:0.0%],F:0.0%,M:99.6%,n:255 9 C:0.4%[S:0.4%,D:0.0%],F:0.0%,M:99.6%,n:255
12 0 Complete and duplicated BUSCOs (D) 12 0 Complete and duplicated BUSCOs (D)
13 0 Fragmented BUSCOs (F) 13 0 Fragmented BUSCOs (F)
14 254 Missing BUSCOs (M) 14 254 Missing BUSCOs (M)
15 255 Total BUSCO groups searched 15 255 Total BUSCO groups searched
16 16
17 Assembly Statistics:
18 1 Number of scaffolds
19 1 Number of contigs
20 62370 Total length
21 0.000% Percent gaps
22 62 KB Scaffold N50
23 62 KB Contigs N50
24
25
17 Dependencies and versions: 26 Dependencies and versions:
18 hmmsearch: 3.1 27 hmmsearch: 3.1
28 bbtools: 39.01
19 prodigal: 2.6.3 29 prodigal: 2.6.3
20 metaeuk: 5.34c21f2 30 busco: 5.4.4
31 metaeuk: 6.a5d39d9