Mercurial > repos > iuc > bwa_mem2
changeset 6:d459a463cb73 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit 05dbd4644d6c63d6404d1c79ba1d0b6000807ca5
| author | iuc |
|---|---|
| date | Fri, 28 Mar 2025 15:51:05 +0000 (2 days ago) |
| parents | fea76fc17330 |
| children | |
| files | bwa-mem2.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/bwa-mem2.xml Fri Mar 28 08:29:39 2025 +0000 +++ b/bwa-mem2.xml Fri Mar 28 15:51:05 2025 +0000 @@ -116,9 +116,9 @@ #end if #if str( $output_sort ) == "coordinate": - | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' + | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' #elif str( $output_sort ) == "name": - | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' + | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' #else | samtools view -@ \${GALAXY_SLOTS:-2} -bS - -o '$bam_output' #end if
--- a/macros.xml Fri Mar 28 08:29:39 2025 +0000 +++ b/macros.xml Fri Mar 28 15:51:05 2025 +0000 @@ -2,7 +2,7 @@ <import>read_group_macros.xml</import> <token name="@TOOL_VERSION@">2.2.1</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@PROFILE_VERSION@">20.01</token> <xml name="xrefs">