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comparison bwameth.xml @ 2:2e4674c16615 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit 10747839851e862ba0200061e1c99d68e009fb18
author iuc
date Sun, 12 Mar 2017 04:11:22 -0400
parents 404fae08ea31
children a6ea26c1f225
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1:404fae08ea31 2:2e4674c16615
29 #elif $single_or_paired.single_or_paired_opts == 'paired': 29 #elif $single_or_paired.single_or_paired_opts == 'paired':
30 $single_or_paired.input_mate1 $single_or_paired.input_mate2 30 $single_or_paired.input_mate1 $single_or_paired.input_mate2
31 #else: 31 #else:
32 $single_or_paired.input_mate1.forward $single_or_paired.input_mate1.reverse 32 $single_or_paired.input_mate1.forward $single_or_paired.input_mate1.reverse
33 #end if 33 #end if
34 | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -o output.bam - 34 | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -T tmp -O bam -o output.bam -
35 ]]> 35 ]]>
36 </command> 36 </command>
37 <inputs> 37 <inputs>
38 <conditional name="referenceSource"> 38 <conditional name="referenceSource">
39 <param name="source" type="select" label="Select a genome reference from your history or a built-in index?"> 39 <param name="source" type="select" label="Select a genome reference from your history or a built-in index?">