Mercurial > repos > iuc > checkm2
comparison tool-data/checkm2.loc.sample @ 0:0f5f7fa9c08f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/main/tools/checkm2/ commit 043f6bb449b27287b413a937b21d918569cfdad7
| author | iuc |
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| date | Sun, 19 Jan 2025 18:48:22 +0000 |
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| -1:000000000000 | 0:0f5f7fa9c08f |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a the checkm2 dabase. | |
| 3 #You will need to create these data files using the following command | |
| 4 | |
| 5 #checkm2 database --download --path /custom/path/ | |
| 6 | |
| 7 #and then create a checkm2_db_versioned.loc file similar to this one (store it in this | |
| 8 #directory) that points to the directories in which those files are stored. | |
| 9 | |
| 10 #The checkm2_db_versioned.loc file has this format (longer white space | |
| 11 #characters are TAB characters): | |
| 12 # | |
| 13 #<unique_build_id> <dbkey> <display_name> <version> <file_base_path> | |
| 14 | |
| 15 #The <version> column indicates the checkm2 version that generated the database | |
| 16 | |
| 17 # | |
| 18 #diamond_db_1.0.2 1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd |