Mercurial > repos > iuc > checkm2_build_database
changeset 1:64630d815957 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_checkm2 commit 043f6bb449b27287b413a937b21d918569cfdad7
| author | iuc |
|---|---|
| date | Sun, 19 Jan 2025 18:48:14 +0000 |
| parents | 4abc306ec842 |
| children | df2f47a0e57a |
| files | data_manager/checkm2_datamanager.xml data_manager_conf.xml test-data/checkm2.loc tool-data/checkm2.loc.sample |
| diffstat | 4 files changed, 5 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/checkm2_datamanager.xml Tue Jan 14 20:27:00 2025 +0000 +++ b/data_manager/checkm2_datamanager.xml Sun Jan 19 18:48:14 2025 +0000 @@ -27,6 +27,7 @@ "checkm2":[ { "path":"uniref100.KO.1.dmnd", + "dbkey":"@TOOL_VERSION@", "name":"CheckM2 diamond DB downloaded with version @TOOL_VERSION@", "version":"@TOOL_VERSION@", "value":"@TOOL_VERSION@"
--- a/data_manager_conf.xml Tue Jan 14 20:27:00 2025 +0000 +++ b/data_manager_conf.xml Sun Jan 19 18:48:14 2025 +0000 @@ -3,6 +3,7 @@ <data_table name="checkm2"> <output> <column name="value"/> + <column name="dbkey"/> <column name="name"/> <column name="version"/> <column name="path" output_ref="out_file">
--- a/test-data/checkm2.loc Tue Jan 14 20:27:00 2025 +0000 +++ b/test-data/checkm2.loc Sun Jan 19 18:48:14 2025 +0000 @@ -1,2 +1,2 @@ -1.0.2 CheckM2 diamond DB downloaded with version 1.0.2 1.0.2 /tmp/tmpf_hplx2a/galaxy-dev/tool-data/checkm2/1.0.2/uniref100.KO.1.dmnd +1.0.2 1.0.2 CheckM2 diamond DB downloaded with version 1.0.2 1.0.2 /tmp/tmpf_hplx2a/galaxy-dev/tool-data/checkm2/1.0.2/uniref100.KO.1.dmnd
--- a/tool-data/checkm2.loc.sample Tue Jan 14 20:27:00 2025 +0000 +++ b/tool-data/checkm2.loc.sample Sun Jan 19 18:48:14 2025 +0000 @@ -10,9 +10,9 @@ #The checkm2_db_versioned.loc file has this format (longer white space #characters are TAB characters): # -#<unique_build_id> <display_name> <version> <file_base_path> +#<unique_build_id> <dbkey> <display_name> <version> <file_base_path> #The <version> column indicates the checkm2 version that generated the database # -#diamond_db_1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd +#diamond_db_1.0.2 1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd