Mercurial > repos > iuc > checkm_tree
changeset 5:d030ce59f075 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit ea21e425f6a04a586626c4a6d848aed1d1261b30
| author | iuc |
|---|---|
| date | Sat, 16 Aug 2025 10:22:33 +0000 |
| parents | 626ab1058170 |
| children | |
| files | macros.xml test-data/life.loc tool-data/class.loc.sample tool-data/domain.loc.sample tool-data/family.loc.sample tool-data/genus.loc.sample tool-data/life.loc.sample tool-data/order.loc.sample tool-data/phylum.loc.sample tool-data/species.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 12 files changed, 1374 insertions(+), 1505 deletions(-) [+] |
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--- a/macros.xml Tue Jun 17 12:58:00 2025 +0000 +++ b/macros.xml Sat Aug 16 10:22:33 2025 +0000 @@ -1,8 +1,8 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.2.4</token> - <token name="@VERSION_SUFFIX@">1</token> - <token name="@PROFILE@">21.01</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@PROFILE@">24.0</token> <xml name="biotools"> <xrefs> <xref type="bio.tools">checkm</xref> @@ -135,51 +135,1402 @@ </param> <when value="life"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="life_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Prokaryote">Prokaryote (5656 genomes, 56 marker genes, 24 marker sets)</option> </param> </when> <when value="domain"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="domain_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Archaea">Archaea (207 genomes, 149 marker genes, 107 marker sets)</option> + <option value="Bacteria">Bacteria (5449 genomes, 104 marker genes, 58 marker sets)</option> </param> </when> <when value="phylum"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="phylum_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Acidobacteria">Acidobacteria (15 genomes, 399 marker genes, 276 marker sets)</option> + <option value="Actinobacteria">Actinobacteria (731 genomes, 204 marker genes, 119 marker sets)</option> + <option value="Aquificae">Aquificae (18 genomes, 486 marker genes, 369 marker sets)</option> + <option value="Bacteroidetes">Bacteroidetes (419 genomes, 286 marker genes, 195 marker sets)</option> + <option value="Chlamydiae">Chlamydiae (64 genomes, 455 marker genes, 185 marker sets)</option> + <option value="Chlorobi">Chlorobi (12 genomes, 612 marker genes, 333 marker sets)</option> + <option value="Chloroflexi">Chloroflexi (20 genomes, 225 marker genes, 149 marker sets)</option> + <option value="Crenarchaeota">Crenarchaeota (54 genomes, 217 marker genes, 168 marker sets)</option> + <option value="Cyanobacteria">Cyanobacteria (129 genomes, 472 marker genes, 368 marker sets)</option> + <option value="Deferribacteres">Deferribacteres (6 genomes, 564 marker genes, 339 marker sets)</option> + <option value="Deinococcus-Thermus">Deinococcus-Thermus (40 genomes, 528 marker genes, 359 marker sets)</option> + <option value="Dictyoglomi">Dictyoglomi (2 genomes, 1060 marker genes, 103 marker sets)</option> + <option value="Euryarchaeota">Euryarchaeota (146 genomes, 188 marker genes, 125 marker sets)</option> + <option value="Firmicutes">Firmicutes (1349 genomes, 172 marker genes, 99 marker sets)</option> + <option value="Fusobacteria">Fusobacteria (32 genomes, 289 marker genes, 159 marker sets)</option> + <option value="Ignavibacteriae">Ignavibacteriae (2 genomes, 1003 marker genes, 383 marker sets)</option> + <option value="Nitrospirae">Nitrospirae (4 genomes, 676 marker genes, 379 marker sets)</option> + <option value="Planctomycetes">Planctomycetes (11 genomes, 360 marker genes, 256 marker sets)</option> + <option value="Proteobacteria">Proteobacteria (2343 genomes, 182 marker genes, 119 marker sets)</option> + <option value="Spirochaetes">Spirochaetes (71 genomes, 218 marker genes, 127 marker sets)</option> + <option value="Synergistetes">Synergistetes (13 genomes, 452 marker genes, 160 marker sets)</option> + <option value="Tenericutes">Tenericutes (119 genomes, 177 marker genes, 105 marker sets)</option> + <option value="Thaumarchaeota">Thaumarchaeota (4 genomes, 548 marker genes, 265 marker sets)</option> + <option value="Thermodesulfobacteria">Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets)</option> + <option value="Thermotogae">Thermotogae (14 genomes, 460 marker genes, 267 marker sets)</option> + <option value="Verrucomicrobia">Verrucomicrobia (12 genomes, 346 marker genes, 245 marker sets)</option> </param> </when> <when value="order"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="order_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Acholeplasmatales">Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets)</option> + <option value="Acidilobales">Acidilobales (3 genomes, 558 marker genes, 236 marker sets)</option> + <option value="Acidithiobacillales">Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets)</option> + <option value="Acidobacteriales">Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets)</option> + <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> + <option value="Actinomycetales">Actinomycetales (620 genomes, 256 marker genes, 152 marker sets)</option> + <option value="Aeromonadales">Aeromonadales (23 genomes, 456 marker genes, 237 marker sets)</option> + <option value="Alteromonadales">Alteromonadales (116 genomes, 519 marker genes, 267 marker sets)</option> + <option value="Aquificales">Aquificales (18 genomes, 486 marker genes, 369 marker sets)</option> + <option value="Archaeoglobales">Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets)</option> + <option value="Bacillales">Bacillales (331 genomes, 319 marker genes, 134 marker sets)</option> + <option value="Bacteroidales">Bacteroidales (210 genomes, 402 marker genes, 267 marker sets)</option> + <option value="Bacteroidetes Order II. Incertae sedis">Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets)</option> + <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> + <option value="Bdellovibrionales">Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets)</option> + <option value="Bifidobacteriales">Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets)</option> + <option value="Burkholderiales">Burkholderiales (194 genomes, 427 marker genes, 216 marker sets)</option> + <option value="Campylobacterales">Campylobacterales (107 genomes, 458 marker genes, 273 marker sets)</option> + <option value="Cardiobacteriales">Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets)</option> + <option value="Caulobacterales">Caulobacterales (15 genomes, 644 marker genes, 366 marker sets)</option> + <option value="Chlamydiales">Chlamydiales (64 genomes, 455 marker genes, 185 marker sets)</option> + <option value="Chlorobiales">Chlorobiales (12 genomes, 612 marker genes, 333 marker sets)</option> + <option value="Chloroflexales">Chloroflexales (8 genomes, 501 marker genes, 342 marker sets)</option> + <option value="Chromatiales">Chromatiales (92 genomes, 595 marker genes, 283 marker sets)</option> + <option value="Chroococcales">Chroococcales (55 genomes, 490 marker genes, 378 marker sets)</option> + <option value="Clostridiales">Clostridiales (395 genomes, 202 marker genes, 114 marker sets)</option> + <option value="Coriobacteriales">Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets)</option> + <option value="Cytophagales">Cytophagales (48 genomes, 438 marker genes, 328 marker sets)</option> + <option value="Deferribacterales">Deferribacterales (6 genomes, 564 marker genes, 339 marker sets)</option> + <option value="Dehalococcoidales">Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets)</option> + <option value="Deinococcales">Deinococcales (17 genomes, 563 marker genes, 388 marker sets)</option> + <option value="Desulfobacterales">Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets)</option> + <option value="Desulfovibrionales">Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets)</option> + <option value="Desulfurellales">Desulfurellales (4 genomes, 817 marker genes, 252 marker sets)</option> + <option value="Desulfurococcales">Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets)</option> + <option value="Desulfuromonadales">Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets)</option> + <option value="Dictyoglomales">Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets)</option> + <option value="Enterobacteriales">Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets)</option> + <option value="Entomoplasmatales">Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets)</option> + <option value="Erysipelotrichales">Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets)</option> + <option value="Flavobacteriales">Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets)</option> + <option value="Fusobacteriales">Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets)</option> + <option value="Halanaerobiales">Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets)</option> + <option value="Halobacteriales">Halobacteriales (59 genomes, 367 marker genes, 241 marker sets)</option> + <option value="Holophagales">Holophagales (2 genomes, 883 marker genes, 459 marker sets)</option> + <option value="Hydrogenophilales">Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets)</option> + <option value="Ignavibacteriales">Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets)</option> + <option value="Lactobacillales">Lactobacillales (490 genomes, 335 marker genes, 183 marker sets)</option> + <option value="Legionellales">Legionellales (23 genomes, 545 marker genes, 269 marker sets)</option> + <option value="Mariprofundales">Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets)</option> + <option value="Methanobacteriales">Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets)</option> + <option value="Methanocellales">Methanocellales (3 genomes, 712 marker genes, 317 marker sets)</option> + <option value="Methanococcales">Methanococcales (16 genomes, 610 marker genes, 439 marker sets)</option> + <option value="Methanomicrobiales">Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets)</option> + <option value="Methanosarcinales">Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets)</option> + <option value="Methylococcales">Methylococcales (15 genomes, 684 marker genes, 348 marker sets)</option> + <option value="Methylophilales">Methylophilales (16 genomes, 685 marker genes, 234 marker sets)</option> + <option value="Mycoplasmatales">Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets)</option> + <option value="Myxococcales">Myxococcales (8 genomes, 534 marker genes, 348 marker sets)</option> + <option value="Nautiliales">Nautiliales (4 genomes, 712 marker genes, 351 marker sets)</option> + <option value="Neisseriales">Neisseriales (69 genomes, 658 marker genes, 446 marker sets)</option> + <option value="Nitrosomonadales">Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets)</option> + <option value="Nitrosopumilales">Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets)</option> + <option value="Nitrospirales">Nitrospirales (4 genomes, 676 marker genes, 379 marker sets)</option> + <option value="Nostocales">Nostocales (18 genomes, 732 marker genes, 508 marker sets)</option> + <option value="Oceanospirillales">Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets)</option> + <option value="Opitutales">Opitutales (3 genomes, 859 marker genes, 521 marker sets)</option> + <option value="Oscillatoriales">Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets)</option> + <option value="Pasteurellales">Pasteurellales (83 genomes, 767 marker genes, 440 marker sets)</option> + <option value="Planctomycetales">Planctomycetales (10 genomes, 370 marker genes, 265 marker sets)</option> + <option value="Pleurocapsales">Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets)</option> + <option value="Prochlorales">Prochlorales (18 genomes, 806 marker genes, 240 marker sets)</option> + <option value="Pseudomonadales">Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets)</option> + <option value="Rhizobiales">Rhizobiales (349 genomes, 407 marker genes, 244 marker sets)</option> + <option value="Rhodobacterales">Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets)</option> + <option value="Rhodocyclales">Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets)</option> + <option value="Rhodospirillales">Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets)</option> + <option value="Rickettsiales">Rickettsiales (81 genomes, 325 marker genes, 210 marker sets)</option> + <option value="Rubrobacterales">Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets)</option> + <option value="Selenomonadales">Selenomonadales (64 genomes, 334 marker genes, 167 marker sets)</option> + <option value="Solirubrobacterales">Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets)</option> + <option value="Sphingobacteriales">Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets)</option> + <option value="Sphingomonadales">Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets)</option> + <option value="Spirochaetales">Spirochaetales (71 genomes, 218 marker genes, 127 marker sets)</option> + <option value="Stigonematales">Stigonematales (5 genomes, 1007 marker genes, 576 marker sets)</option> + <option value="Sulfolobales">Sulfolobales (20 genomes, 499 marker genes, 141 marker sets)</option> + <option value="Synergistales">Synergistales (13 genomes, 452 marker genes, 160 marker sets)</option> + <option value="Thermales">Thermales (23 genomes, 585 marker genes, 331 marker sets)</option> + <option value="Thermoanaerobacterales">Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets)</option> + <option value="Thermococcales">Thermococcales (16 genomes, 500 marker genes, 315 marker sets)</option> + <option value="Thermodesulfobacteriales">Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets)</option> + <option value="Thermoplasmatales">Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets)</option> + <option value="Thermoproteales">Thermoproteales (13 genomes, 315 marker genes, 257 marker sets)</option> + <option value="Thermotogales">Thermotogales (14 genomes, 460 marker genes, 267 marker sets)</option> + <option value="Thiotrichales">Thiotrichales (64 genomes, 406 marker genes, 251 marker sets)</option> + <option value="Verrucomicrobiales">Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets)</option> + <option value="Vibrionales">Vibrionales (80 genomes, 922 marker genes, 367 marker sets)</option> + <option value="Xanthomonadales">Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)</option> </param> </when> <when value="family"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="family_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Acetobacteraceae">Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets)</option> + <option value="Acholeplasmataceae">Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets)</option> + <option value="Acidaminococcaceae">Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets)</option> + <option value="Acidilobaceae">Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets)</option> + <option value="Acidithiobacillaceae">Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets)</option> + <option value="Acidobacteriaceae">Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets)</option> + <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> + <option value="Actinomycetaceae">Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets)</option> + <option value="Actinopolysporaceae">Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets)</option> + <option value="Aerococcaceae">Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets)</option> + <option value="Aeromonadaceae">Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets)</option> + <option value="Alcaligenaceae">Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets)</option> + <option value="Alcanivoracaceae">Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets)</option> + <option value="Alicyclobacillaceae">Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets)</option> + <option value="Alteromonadaceae">Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets)</option> + <option value="Anaplasmataceae">Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets)</option> + <option value="Aquificaceae">Aquificaceae (10 genomes, 656 marker genes, 475 marker sets)</option> + <option value="Archaeoglobaceae">Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets)</option> + <option value="Arthrospira">Arthrospira (2 genomes, 1432 marker genes, 419 marker sets)</option> + <option value="Aurantimonadaceae">Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets)</option> + <option value="Bacillaceae">Bacillaceae (162 genomes, 418 marker genes, 155 marker sets)</option> + <option value="Bacteroidaceae">Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets)</option> + <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> + <option value="Bartonellaceae">Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets)</option> + <option value="Bdellovibrionaceae">Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets)</option> + <option value="Beijerinckiaceae">Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets)</option> + <option value="Bifidobacteriaceae">Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets)</option> + <option value="Blattabacteriaceae">Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets)</option> + <option value="Brachyspiraceae">Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets)</option> + <option value="Bradyrhizobiaceae">Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets)</option> + <option value="Brevibacteriaceae">Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets)</option> + <option value="Brucellaceae">Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets)</option> + <option value="Burkholderiaceae">Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets)</option> + <option value="Campylobacteraceae">Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets)</option> + <option value="Cardiobacteriaceae">Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets)</option> + <option value="Carnobacteriaceae">Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets)</option> + <option value="Caulobacteraceae">Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets)</option> + <option value="Cellulomonadaceae">Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets)</option> + <option value="Chitinophagaceae">Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets)</option> + <option value="Chlamydiaceae">Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets)</option> + <option value="Chlorobiaceae">Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets)</option> + <option value="Chloroflexaceae">Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets)</option> + <option value="Chromatiaceae">Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets)</option> + <option value="Chroococcidiopsis">Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets)</option> + <option value="Clostridiaceae">Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets)</option> + <option value="Clostridiales Family XI. Incertae Sedis">Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets)</option> + <option value="Clostridiales Family XVII. Incertae Sedis">Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets)</option> + <option value="Colwelliaceae">Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets)</option> + <option value="Comamonadaceae">Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets)</option> + <option value="Conexibacteraceae">Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets)</option> + <option value="Coriobacteriaceae">Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets)</option> + <option value="Corynebacteriaceae">Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets)</option> + <option value="Coxiellaceae">Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets)</option> + <option value="Cryomorphaceae">Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets)</option> + <option value="Cyanobacterium">Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets)</option> + <option value="Cyanobium">Cyanobium (2 genomes, 1225 marker genes, 277 marker sets)</option> + <option value="Cyanothece">Cyanothece (8 genomes, 865 marker genes, 653 marker sets)</option> + <option value="Cyclobacteriaceae">Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets)</option> + <option value="Cytophagaceae">Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets)</option> + <option value="Deferribacteraceae">Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets)</option> + <option value="Dehalococcoidaceae">Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets)</option> + <option value="Deinococcaceae">Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets)</option> + <option value="Dermabacteraceae">Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets)</option> + <option value="Dermacoccaceae">Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets)</option> + <option value="Dermatophilaceae">Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets)</option> + <option value="Desulfobacteraceae">Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets)</option> + <option value="Desulfobulbaceae">Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets)</option> + <option value="Desulfohalobiaceae">Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets)</option> + <option value="Desulfomicrobiaceae">Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets)</option> + <option value="Desulfovibrionaceae">Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets)</option> + <option value="Desulfurellaceae">Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets)</option> + <option value="Desulfurobacteriaceae">Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets)</option> + <option value="Desulfurococcaceae">Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets)</option> + <option value="Dictyoglomaceae">Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets)</option> + <option value="Ectothiorhodospiraceae">Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets)</option> + <option value="Enterobacteriaceae">Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets)</option> + <option value="Enterococcaceae">Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets)</option> + <option value="Entomoplasmataceae">Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets)</option> + <option value="Erysipelotrichaceae">Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets)</option> + <option value="Erythrobacteraceae">Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets)</option> + <option value="Eubacteriaceae">Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets)</option> + <option value="Exiguobacterium">Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets)</option> + <option value="Fangia">Fangia (2 genomes, 1383 marker genes, 144 marker sets)</option> + <option value="Ferrimonadaceae">Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets)</option> + <option value="Fischerella">Fischerella (4 genomes, 1081 marker genes, 585 marker sets)</option> + <option value="Flammeovirgaceae">Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets)</option> + <option value="Flavobacteriaceae">Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets)</option> + <option value="Francisellaceae">Francisellaceae (40 genomes, 787 marker genes, 238 marker sets)</option> + <option value="Frankiaceae">Frankiaceae (12 genomes, 569 marker genes, 282 marker sets)</option> + <option value="Fusobacteriaceae">Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets)</option> + <option value="Gemella">Gemella (5 genomes, 787 marker genes, 169 marker sets)</option> + <option value="Geobacteraceae">Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets)</option> + <option value="Geodermatophilaceae">Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets)</option> + <option value="Gloeocapsa">Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets)</option> + <option value="Glycomycetaceae">Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets)</option> + <option value="Gordoniaceae">Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets)</option> + <option value="Hahellaceae">Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets)</option> + <option value="Halanaerobiaceae">Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets)</option> + <option value="Halobacteriaceae">Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets)</option> + <option value="Halobacteroidaceae">Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets)</option> + <option value="Halomonadaceae">Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets)</option> + <option value="Helicobacteraceae">Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets)</option> + <option value="Holophagaceae">Holophagaceae (2 genomes, 883 marker genes, 459 marker sets)</option> + <option value="Hydrogenophilaceae">Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets)</option> + <option value="Hydrogenothermaceae">Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets)</option> + <option value="Hyphomicrobiaceae">Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets)</option> + <option value="Hyphomonadaceae">Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets)</option> + <option value="Idiomarinaceae">Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets)</option> + <option value="Intrasporangiaceae">Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets)</option> + <option value="Jonesiaceae">Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets)</option> + <option value="Lachnospiraceae">Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets)</option> + <option value="Lactobacillaceae">Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets)</option> + <option value="Legionellaceae">Legionellaceae (18 genomes, 695 marker genes, 290 marker sets)</option> + <option value="Leptolyngbya">Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets)</option> + <option value="Leptospiraceae">Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets)</option> + <option value="Leptotrichiaceae">Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets)</option> + <option value="Leuconostocaceae">Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets)</option> + <option value="Listeriaceae">Listeriaceae (25 genomes, 873 marker genes, 158 marker sets)</option> + <option value="Lyngbya">Lyngbya (2 genomes, 1111 marker genes, 753 marker sets)</option> + <option value="Mariprofundaceae">Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets)</option> + <option value="Methanobacteriaceae">Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets)</option> + <option value="Methanocaldococcaceae">Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets)</option> + <option value="Methanocellaceae">Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets)</option> + <option value="Methanococcaceae">Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets)</option> + <option value="Methanocorpusculaceae">Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets)</option> + <option value="Methanomicrobiaceae">Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets)</option> + <option value="Methanoregulaceae">Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets)</option> + <option value="Methanosaetaceae">Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets)</option> + <option value="Methanosarcinaceae">Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets)</option> + <option value="Methylobacteriaceae">Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets)</option> + <option value="Methylococcaceae">Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets)</option> + <option value="Methylocystaceae">Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets)</option> + <option value="Methylophilaceae">Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets)</option> + <option value="Microbacteriaceae">Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets)</option> + <option value="Microchaetaceae">Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets)</option> + <option value="Micrococcaceae">Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets)</option> + <option value="Microcoleus">Microcoleus (2 genomes, 1191 marker genes, 754 marker sets)</option> + <option value="Micromonosporaceae">Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets)</option> + <option value="Moraxellaceae">Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets)</option> + <option value="Mycobacteriaceae">Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets)</option> + <option value="Mycoplasmataceae">Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets)</option> + <option value="Myxococcaceae">Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets)</option> + <option value="Nakamurellaceae">Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets)</option> + <option value="Nautiliaceae">Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets)</option> + <option value="Neisseriaceae">Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets)</option> + <option value="Nitrosomonadaceae">Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets)</option> + <option value="Nitrosopumilaceae">Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets)</option> + <option value="Nitrospiraceae">Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets)</option> + <option value="Nocardiaceae">Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets)</option> + <option value="Nocardioidaceae">Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets)</option> + <option value="Nocardiopsaceae">Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets)</option> + <option value="Nostocaceae">Nostocaceae (13 genomes, 800 marker genes, 536 marker sets)</option> + <option value="Oceanospirillaceae">Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets)</option> + <option value="Opitutaceae">Opitutaceae (3 genomes, 859 marker genes, 521 marker sets)</option> + <option value="Oscillatoria">Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets)</option> + <option value="Oxalobacteraceae">Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets)</option> + <option value="Paenibacillaceae">Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets)</option> + <option value="Parachlamydiaceae">Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets)</option> + <option value="Pasteurellaceae">Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets)</option> + <option value="Patulibacteraceae">Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets)</option> + <option value="Pelagibacteraceae">Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets)</option> + <option value="Pelobacteraceae">Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets)</option> + <option value="Peptococcaceae">Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets)</option> + <option value="Peptostreptococcaceae">Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets)</option> + <option value="Phyllobacteriaceae">Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets)</option> + <option value="Piscirickettsiaceae">Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets)</option> + <option value="Planctomycetaceae">Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets)</option> + <option value="Planktothrix">Planktothrix (6 genomes, 1307 marker genes, 425 marker sets)</option> + <option value="Planococcaceae">Planococcaceae (6 genomes, 823 marker genes, 233 marker sets)</option> + <option value="Pleurocapsa">Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets)</option> + <option value="Porphyromonadaceae">Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets)</option> + <option value="Prevotellaceae">Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets)</option> + <option value="Prochlorococcaceae">Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets)</option> + <option value="Promicromonosporaceae">Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets)</option> + <option value="Propionibacteriaceae">Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets)</option> + <option value="Pseudanabaena">Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets)</option> + <option value="Pseudoalteromonadaceae">Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets)</option> + <option value="Pseudomonadaceae">Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets)</option> + <option value="Pseudonocardiaceae">Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets)</option> + <option value="Psychromonadaceae">Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets)</option> + <option value="Pyrodictiaceae">Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets)</option> + <option value="Rhizobiaceae">Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets)</option> + <option value="Rhodobacteraceae">Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets)</option> + <option value="Rhodobiaceae">Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets)</option> + <option value="Rhodocyclaceae">Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets)</option> + <option value="Rhodospirillaceae">Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets)</option> + <option value="Rhodothermaceae">Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets)</option> + <option value="Rickettsiaceae">Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets)</option> + <option value="Rikenellaceae">Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets)</option> + <option value="Rivulariaceae">Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets)</option> + <option value="Rubrivivax">Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets)</option> + <option value="Rubrobacteraceae">Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets)</option> + <option value="Ruminococcaceae">Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets)</option> + <option value="Saprospiraceae">Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets)</option> + <option value="Shewanellaceae">Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets)</option> + <option value="Sinobacteraceae">Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets)</option> + <option value="Solirubrobacteraceae">Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets)</option> + <option value="Sphingobacteriaceae">Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets)</option> + <option value="Sphingomonadaceae">Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets)</option> + <option value="Spirochaetaceae">Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets)</option> + <option value="Sporolactobacillaceae">Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets)</option> + <option value="Staphylococcaceae">Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets)</option> + <option value="Streptococcaceae">Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets)</option> + <option value="Streptomycetaceae">Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets)</option> + <option value="Streptosporangiaceae">Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets)</option> + <option value="Succinivibrionaceae">Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets)</option> + <option value="Sulfolobaceae">Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets)</option> + <option value="Sutterellaceae">Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets)</option> + <option value="Synechococcus">Synechococcus (25 genomes, 554 marker genes, 425 marker sets)</option> + <option value="Synechocystis">Synechocystis (5 genomes, 1099 marker genes, 794 marker sets)</option> + <option value="Synergistaceae">Synergistaceae (13 genomes, 452 marker genes, 160 marker sets)</option> + <option value="Syntrophomonadaceae">Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets)</option> + <option value="Teredinibacter">Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets)</option> + <option value="Thermaceae">Thermaceae (23 genomes, 585 marker genes, 331 marker sets)</option> + <option value="Thermoactinomycetaceae">Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets)</option> + <option value="Thermoanaerobacteraceae">Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets)</option> + <option value="Thermoanaerobacterales Family III. Incertae Sedis">Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets)</option> + <option value="Thermococcaceae">Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets)</option> + <option value="Thermodesulfobacteriaceae">Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets)</option> + <option value="Thermodesulfobiaceae">Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets)</option> + <option value="Thermomonosporaceae">Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets)</option> + <option value="Thermoplasmataceae">Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets)</option> + <option value="Thermoproteaceae">Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets)</option> + <option value="Thermotogaceae">Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets)</option> + <option value="Thiomonas">Thiomonas (3 genomes, 1202 marker genes, 366 marker sets)</option> + <option value="Thiotrichaceae">Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets)</option> + <option value="Veillonellaceae">Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets)</option> + <option value="Verrucomicrobiaceae">Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets)</option> + <option value="Vibrionaceae">Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets)</option> + <option value="Xanthobacteraceae">Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets)</option> + <option value="Xanthomonadaceae">Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)</option> </param> </when> <when value="genus"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="genus_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Acetobacter">Acetobacter (11 genomes, 1037 marker genes, 392 marker sets)</option> + <option value="Acholeplasma">Acholeplasma (7 genomes, 309 marker genes, 151 marker sets)</option> + <option value="Achromobacter">Achromobacter (5 genomes, 1298 marker genes, 427 marker sets)</option> + <option value="Acidaminococcus">Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets)</option> + <option value="Acidilobus">Acidilobus (2 genomes, 645 marker genes, 144 marker sets)</option> + <option value="Acidiphilium">Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets)</option> + <option value="Acidithiobacillus">Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets)</option> + <option value="Acidobacterium">Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets)</option> + <option value="Acidovorax">Acidovorax (9 genomes, 931 marker genes, 335 marker sets)</option> + <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> + <option value="Acinetobacter">Acinetobacter (66 genomes, 883 marker genes, 281 marker sets)</option> + <option value="Actinobacillus">Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets)</option> + <option value="Actinobaculum">Actinobaculum (5 genomes, 606 marker genes, 222 marker sets)</option> + <option value="Actinomadura">Actinomadura (3 genomes, 940 marker genes, 376 marker sets)</option> + <option value="Actinomyces">Actinomyces (27 genomes, 432 marker genes, 214 marker sets)</option> + <option value="Actinoplanes">Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets)</option> + <option value="Actinopolyspora">Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets)</option> + <option value="Aequorivita">Aequorivita (2 genomes, 1087 marker genes, 283 marker sets)</option> + <option value="Aerococcus">Aerococcus (2 genomes, 719 marker genes, 247 marker sets)</option> + <option value="Aeromonas">Aeromonas (12 genomes, 1380 marker genes, 463 marker sets)</option> + <option value="Aggregatibacter">Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets)</option> + <option value="Agrobacterium">Agrobacterium (12 genomes, 994 marker genes, 379 marker sets)</option> + <option value="Agromyces">Agromyces (2 genomes, 1096 marker genes, 287 marker sets)</option> + <option value="Ahrensia">Ahrensia (2 genomes, 1213 marker genes, 422 marker sets)</option> + <option value="Alcaligenes">Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets)</option> + <option value="Alcanivorax">Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets)</option> + <option value="Algoriphagus">Algoriphagus (5 genomes, 947 marker genes, 361 marker sets)</option> + <option value="Aliagarivorans">Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets)</option> + <option value="Alicycliphilus">Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets)</option> + <option value="Alicyclobacillus">Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets)</option> + <option value="Alishewanella">Alishewanella (2 genomes, 1677 marker genes, 232 marker sets)</option> + <option value="Alistipes">Alistipes (5 genomes, 703 marker genes, 335 marker sets)</option> + <option value="Alkaliphilus">Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets)</option> + <option value="Alloscardovia">Alloscardovia (2 genomes, 950 marker genes, 116 marker sets)</option> + <option value="Alteromonas">Alteromonas (6 genomes, 1419 marker genes, 314 marker sets)</option> + <option value="Aminobacterium">Aminobacterium (2 genomes, 950 marker genes, 145 marker sets)</option> + <option value="Amycolatopsis">Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets)</option> + <option value="Anabaena">Anabaena (5 genomes, 992 marker genes, 584 marker sets)</option> + <option value="Anaerococcus">Anaerococcus (6 genomes, 665 marker genes, 181 marker sets)</option> + <option value="Anaeromyxobacter">Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets)</option> + <option value="Anaplasma">Anaplasma (2 genomes, 688 marker genes, 127 marker sets)</option> + <option value="Anoxybacillus">Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets)</option> + <option value="Aquimarina">Aquimarina (2 genomes, 1084 marker genes, 373 marker sets)</option> + <option value="Archaeoglobus">Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets)</option> + <option value="Arcobacter">Arcobacter (8 genomes, 804 marker genes, 234 marker sets)</option> + <option value="Arenibacter">Arenibacter (2 genomes, 1200 marker genes, 269 marker sets)</option> + <option value="Arsenophonus">Arsenophonus (4 genomes, 640 marker genes, 164 marker sets)</option> + <option value="Arthrobacter">Arthrobacter (25 genomes, 473 marker genes, 190 marker sets)</option> + <option value="Arthrospira">Arthrospira (2 genomes, 1432 marker genes, 419 marker sets)</option> + <option value="Asticcacaulis">Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets)</option> + <option value="Atopobium">Atopobium (8 genomes, 486 marker genes, 194 marker sets)</option> + <option value="Aurantimonas">Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets)</option> + <option value="Azoarcus">Azoarcus (2 genomes, 1311 marker genes, 376 marker sets)</option> + <option value="Azorhizobium">Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets)</option> + <option value="Azospira">Azospira (2 genomes, 1578 marker genes, 218 marker sets)</option> + <option value="Azospirillum">Azospirillum (3 genomes, 1038 marker genes, 549 marker sets)</option> + <option value="Azotobacter">Azotobacter (3 genomes, 1930 marker genes, 269 marker sets)</option> + <option value="Bacillus">Bacillus (122 genomes, 491 marker genes, 170 marker sets)</option> + <option value="Bacteroides">Bacteroides (96 genomes, 524 marker genes, 282 marker sets)</option> + <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> + <option value="Barnesiella">Barnesiella (2 genomes, 1045 marker genes, 230 marker sets)</option> + <option value="Bartonella">Bartonella (29 genomes, 708 marker genes, 188 marker sets)</option> + <option value="Bdellovibrio">Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets)</option> + <option value="Bifidobacterium">Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets)</option> + <option value="Blastococcus">Blastococcus (2 genomes, 1123 marker genes, 317 marker sets)</option> + <option value="Blattabacterium">Blattabacterium (6 genomes, 547 marker genes, 16 marker sets)</option> + <option value="Blautia">Blautia (7 genomes, 649 marker genes, 291 marker sets)</option> + <option value="Bordetella">Bordetella (9 genomes, 892 marker genes, 277 marker sets)</option> + <option value="Borrelia">Borrelia (17 genomes, 474 marker genes, 66 marker sets)</option> + <option value="Brachyspira">Brachyspira (10 genomes, 783 marker genes, 458 marker sets)</option> + <option value="Bradyrhizobium">Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets)</option> + <option value="Brevibacillus">Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets)</option> + <option value="Brevibacterium">Brevibacterium (3 genomes, 833 marker genes, 259 marker sets)</option> + <option value="Brevundimonas">Brevundimonas (6 genomes, 952 marker genes, 452 marker sets)</option> + <option value="Brucella">Brucella (90 genomes, 1371 marker genes, 236 marker sets)</option> + <option value="Buchnera">Buchnera (10 genomes, 380 marker genes, 35 marker sets)</option> + <option value="Burkholderia">Burkholderia (66 genomes, 724 marker genes, 235 marker sets)</option> + <option value="Butyricimonas">Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets)</option> + <option value="Butyrivibrio">Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets)</option> + <option value="Caldicellulosiruptor">Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets)</option> + <option value="Calothrix">Calothrix (2 genomes, 1244 marker genes, 726 marker sets)</option> + <option value="Campylobacter">Campylobacter (55 genomes, 598 marker genes, 263 marker sets)</option> + <option value="Candidatus Arthromitus">Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets)</option> + <option value="Candidatus Blochmannia">Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets)</option> + <option value="Candidatus Liberibacter">Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets)</option> + <option value="Candidatus Pelagibacter">Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets)</option> + <option value="Candidatus Pelagibacter-like">Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets)</option> + <option value="Candidatus Phytoplasma">Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets)</option> + <option value="Capnocytophaga">Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets)</option> + <option value="Carboxydothermus">Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets)</option> + <option value="Cardiobacterium">Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets)</option> + <option value="Caulobacter">Caulobacter (4 genomes, 1219 marker genes, 375 marker sets)</option> + <option value="Cellulomonas">Cellulomonas (6 genomes, 805 marker genes, 257 marker sets)</option> + <option value="Cellulophaga">Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets)</option> + <option value="Chitinilyticum">Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets)</option> + <option value="Chlamydia">Chlamydia (43 genomes, 609 marker genes, 88 marker sets)</option> + <option value="Chlamydophila">Chlamydophila (16 genomes, 616 marker genes, 71 marker sets)</option> + <option value="Chlorobaculum">Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets)</option> + <option value="Chlorobium">Chlorobium (6 genomes, 820 marker genes, 277 marker sets)</option> + <option value="Chloroflexus">Chloroflexus (5 genomes, 659 marker genes, 449 marker sets)</option> + <option value="Chroococcidiopsis">Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets)</option> + <option value="Chryseobacterium">Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets)</option> + <option value="Citreicella">Citreicella (2 genomes, 1369 marker genes, 390 marker sets)</option> + <option value="Citrobacter">Citrobacter (8 genomes, 1566 marker genes, 347 marker sets)</option> + <option value="Citromicrobium">Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets)</option> + <option value="Clavibacter">Clavibacter (2 genomes, 1152 marker genes, 228 marker sets)</option> + <option value="Clostridium">Clostridium (180 genomes, 308 marker genes, 161 marker sets)</option> + <option value="Cohnella">Cohnella (3 genomes, 1072 marker genes, 306 marker sets)</option> + <option value="Collinsella">Collinsella (2 genomes, 829 marker genes, 315 marker sets)</option> + <option value="Colwellia">Colwellia (3 genomes, 1371 marker genes, 293 marker sets)</option> + <option value="Comamonas">Comamonas (5 genomes, 1047 marker genes, 399 marker sets)</option> + <option value="Commensalibacter">Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets)</option> + <option value="Conchiformibius">Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets)</option> + <option value="Coprobacillus">Coprobacillus (3 genomes, 833 marker genes, 331 marker sets)</option> + <option value="Coprococcus">Coprococcus (3 genomes, 780 marker genes, 260 marker sets)</option> + <option value="Coprothermobacter">Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets)</option> + <option value="Corynebacterium">Corynebacterium (80 genomes, 585 marker genes, 243 marker sets)</option> + <option value="Coxiella">Coxiella (5 genomes, 1047 marker genes, 146 marker sets)</option> + <option value="Cronobacter">Cronobacter (4 genomes, 1838 marker genes, 338 marker sets)</option> + <option value="Cupriavidus">Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets)</option> + <option value="Curtobacterium">Curtobacterium (2 genomes, 952 marker genes, 330 marker sets)</option> + <option value="Curvibacter">Curvibacter (2 genomes, 1707 marker genes, 367 marker sets)</option> + <option value="Cyanobacterium">Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets)</option> + <option value="Cyanobium">Cyanobium (2 genomes, 1225 marker genes, 277 marker sets)</option> + <option value="Cyanothece">Cyanothece (8 genomes, 865 marker genes, 653 marker sets)</option> + <option value="Cycloclasticus">Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets)</option> + <option value="Cytophaga">Cytophaga (3 genomes, 745 marker genes, 464 marker sets)</option> + <option value="Dechloromonas">Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets)</option> + <option value="Dehalobacter">Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets)</option> + <option value="Dehalococcoides">Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets)</option> + <option value="Deinococcus">Deinococcus (16 genomes, 630 marker genes, 426 marker sets)</option> + <option value="Delftia">Delftia (3 genomes, 1683 marker genes, 409 marker sets)</option> + <option value="Desulfatibacillum">Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets)</option> + <option value="Desulfobacterium">Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets)</option> + <option value="Desulfobulbus">Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets)</option> + <option value="Desulfomicrobium">Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets)</option> + <option value="Desulfosporosinus">Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets)</option> + <option value="Desulfotignum">Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets)</option> + <option value="Desulfotomaculum">Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets)</option> + <option value="Desulfovibrio">Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets)</option> + <option value="Desulfurococcus">Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets)</option> + <option value="Dialister">Dialister (4 genomes, 695 marker genes, 210 marker sets)</option> + <option value="Dickeya">Dickeya (4 genomes, 1671 marker genes, 311 marker sets)</option> + <option value="Dictyoglomus">Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets)</option> + <option value="Dorea">Dorea (4 genomes, 835 marker genes, 261 marker sets)</option> + <option value="Dyadobacter">Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets)</option> + <option value="Dysgonomonas">Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets)</option> + <option value="Echinicola">Echinicola (2 genomes, 1196 marker genes, 350 marker sets)</option> + <option value="Ectothiorhodospira">Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets)</option> + <option value="Edwardsiella">Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets)</option> + <option value="Eggerthella">Eggerthella (4 genomes, 843 marker genes, 301 marker sets)</option> + <option value="Ehrlichia">Ehrlichia (6 genomes, 704 marker genes, 87 marker sets)</option> + <option value="Elizabethkingia">Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets)</option> + <option value="Ensifer">Ensifer (26 genomes, 1043 marker genes, 323 marker sets)</option> + <option value="Enterobacter">Enterobacter (13 genomes, 1338 marker genes, 370 marker sets)</option> + <option value="Enterococcus">Enterococcus (51 genomes, 672 marker genes, 259 marker sets)</option> + <option value="Enterovibrio">Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets)</option> + <option value="Entomoplasma">Entomoplasma (3 genomes, 460 marker genes, 109 marker sets)</option> + <option value="Eremococcus">Eremococcus (2 genomes, 922 marker genes, 109 marker sets)</option> + <option value="Erwinia">Erwinia (8 genomes, 1420 marker genes, 280 marker sets)</option> + <option value="Erysipelothrix">Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets)</option> + <option value="Erythrobacter">Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets)</option> + <option value="Escherichia">Escherichia (27 genomes, 1212 marker genes, 320 marker sets)</option> + <option value="Eubacterium">Eubacterium (18 genomes, 234 marker genes, 157 marker sets)</option> + <option value="Exiguobacterium">Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets)</option> + <option value="Facklamia">Facklamia (5 genomes, 575 marker genes, 184 marker sets)</option> + <option value="Faecalibacterium">Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets)</option> + <option value="Fangia">Fangia (2 genomes, 1383 marker genes, 144 marker sets)</option> + <option value="Ferrimonas">Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets)</option> + <option value="Finegoldia">Finegoldia (5 genomes, 878 marker genes, 111 marker sets)</option> + <option value="Fischerella">Fischerella (4 genomes, 1081 marker genes, 585 marker sets)</option> + <option value="Flavobacterium">Flavobacterium (20 genomes, 575 marker genes, 320 marker sets)</option> + <option value="Flexibacter">Flexibacter (3 genomes, 877 marker genes, 663 marker sets)</option> + <option value="Francisella">Francisella (40 genomes, 787 marker genes, 238 marker sets)</option> + <option value="Frankia">Frankia (11 genomes, 597 marker genes, 285 marker sets)</option> + <option value="Fusobacterium">Fusobacterium (21 genomes, 502 marker genes, 210 marker sets)</option> + <option value="Gallibacterium">Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets)</option> + <option value="Gardnerella">Gardnerella (14 genomes, 621 marker genes, 237 marker sets)</option> + <option value="Gemella">Gemella (5 genomes, 787 marker genes, 169 marker sets)</option> + <option value="Geobacillus">Geobacillus (15 genomes, 823 marker genes, 228 marker sets)</option> + <option value="Geobacter">Geobacter (10 genomes, 732 marker genes, 332 marker sets)</option> + <option value="Gillisia">Gillisia (2 genomes, 1096 marker genes, 276 marker sets)</option> + <option value="Glaciecola">Glaciecola (9 genomes, 1063 marker genes, 369 marker sets)</option> + <option value="Gloeocapsa">Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets)</option> + <option value="Gluconacetobacter">Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets)</option> + <option value="Gluconobacter">Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets)</option> + <option value="Glycomyces">Glycomyces (2 genomes, 1177 marker genes, 326 marker sets)</option> + <option value="Gordonia">Gordonia (26 genomes, 670 marker genes, 298 marker sets)</option> + <option value="Gramella">Gramella (3 genomes, 1089 marker genes, 213 marker sets)</option> + <option value="Granulicatella">Granulicatella (2 genomes, 891 marker genes, 249 marker sets)</option> + <option value="Granulicella">Granulicella (2 genomes, 1075 marker genes, 507 marker sets)</option> + <option value="Haemophilus">Haemophilus (35 genomes, 829 marker genes, 480 marker sets)</option> + <option value="Hahella">Hahella (2 genomes, 1567 marker genes, 475 marker sets)</option> + <option value="Halalkalicoccus">Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets)</option> + <option value="Halanaerobium">Halanaerobium (2 genomes, 898 marker genes, 186 marker sets)</option> + <option value="Haliea">Haliea (2 genomes, 1214 marker genes, 329 marker sets)</option> + <option value="Haloarcula">Haloarcula (7 genomes, 842 marker genes, 250 marker sets)</option> + <option value="Halobacillus">Halobacillus (3 genomes, 1266 marker genes, 292 marker sets)</option> + <option value="Halobacterium">Halobacterium (3 genomes, 704 marker genes, 224 marker sets)</option> + <option value="Halobiforma">Halobiforma (2 genomes, 1026 marker genes, 320 marker sets)</option> + <option value="Halococcus">Halococcus (2 genomes, 767 marker genes, 347 marker sets)</option> + <option value="Haloferax">Haloferax (10 genomes, 763 marker genes, 229 marker sets)</option> + <option value="Halomicrobium">Halomicrobium (2 genomes, 970 marker genes, 233 marker sets)</option> + <option value="Halomonas">Halomonas (11 genomes, 840 marker genes, 268 marker sets)</option> + <option value="Haloquadratum">Haloquadratum (3 genomes, 798 marker genes, 192 marker sets)</option> + <option value="Halorubrum">Halorubrum (4 genomes, 710 marker genes, 295 marker sets)</option> + <option value="Haloterrigena">Haloterrigena (2 genomes, 826 marker genes, 332 marker sets)</option> + <option value="Helicobacter">Helicobacter (33 genomes, 490 marker genes, 276 marker sets)</option> + <option value="Herbaspirillum">Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets)</option> + <option value="Hippea">Hippea (3 genomes, 979 marker genes, 157 marker sets)</option> + <option value="Hirschia">Hirschia (2 genomes, 1333 marker genes, 222 marker sets)</option> + <option value="Histophilus">Histophilus (2 genomes, 1341 marker genes, 98 marker sets)</option> + <option value="Hydrogenobacter">Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets)</option> + <option value="Hydrogenobaculum">Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets)</option> + <option value="Hymenobacter">Hymenobacter (3 genomes, 998 marker genes, 370 marker sets)</option> + <option value="Hyphomicrobium">Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets)</option> + <option value="Idiomarina">Idiomarina (5 genomes, 1057 marker genes, 247 marker sets)</option> + <option value="Isoptericola">Isoptericola (2 genomes, 1351 marker genes, 168 marker sets)</option> + <option value="Janibacter">Janibacter (2 genomes, 1001 marker genes, 385 marker sets)</option> + <option value="Janthinobacterium">Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets)</option> + <option value="Jeotgalicoccus">Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets)</option> + <option value="Jonesia">Jonesia (2 genomes, 1211 marker genes, 191 marker sets)</option> + <option value="Jonquetella">Jonquetella (2 genomes, 987 marker genes, 78 marker sets)</option> + <option value="Kaistia">Kaistia (2 genomes, 1516 marker genes, 278 marker sets)</option> + <option value="Kandleria">Kandleria (3 genomes, 1026 marker genes, 154 marker sets)</option> + <option value="Kangiella">Kangiella (2 genomes, 1480 marker genes, 165 marker sets)</option> + <option value="Kingella">Kingella (3 genomes, 1040 marker genes, 614 marker sets)</option> + <option value="Klebsiella">Klebsiella (29 genomes, 1359 marker genes, 348 marker sets)</option> + <option value="Labrenzia">Labrenzia (2 genomes, 1431 marker genes, 424 marker sets)</option> + <option value="Lachnobacterium">Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets)</option> + <option value="Lachnospira">Lachnospira (3 genomes, 1045 marker genes, 196 marker sets)</option> + <option value="Lactobacillus">Lactobacillus (135 genomes, 409 marker genes, 155 marker sets)</option> + <option value="Lactococcus">Lactococcus (14 genomes, 683 marker genes, 238 marker sets)</option> + <option value="Laribacter">Laribacter (2 genomes, 1579 marker genes, 150 marker sets)</option> + <option value="Leeuwenhoekiella">Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets)</option> + <option value="Legionella">Legionella (18 genomes, 695 marker genes, 290 marker sets)</option> + <option value="Leifsonia">Leifsonia (2 genomes, 888 marker genes, 212 marker sets)</option> + <option value="Leisingera">Leisingera (3 genomes, 1200 marker genes, 365 marker sets)</option> + <option value="Leptolyngbya">Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets)</option> + <option value="Leptospira">Leptospira (4 genomes, 1176 marker genes, 280 marker sets)</option> + <option value="Leptotrichia">Leptotrichia (7 genomes, 750 marker genes, 335 marker sets)</option> + <option value="Leucobacter">Leucobacter (2 genomes, 948 marker genes, 255 marker sets)</option> + <option value="Leuconostoc">Leuconostoc (15 genomes, 611 marker genes, 181 marker sets)</option> + <option value="Lewinella">Lewinella (2 genomes, 1073 marker genes, 736 marker sets)</option> + <option value="Listeria">Listeria (24 genomes, 1137 marker genes, 165 marker sets)</option> + <option value="Loktanella">Loktanella (5 genomes, 1000 marker genes, 308 marker sets)</option> + <option value="Luteimonas">Luteimonas (2 genomes, 1277 marker genes, 311 marker sets)</option> + <option value="Lyngbya">Lyngbya (2 genomes, 1111 marker genes, 753 marker sets)</option> + <option value="Lysinibacillus">Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets)</option> + <option value="Lysobacter">Lysobacter (2 genomes, 1235 marker genes, 265 marker sets)</option> + <option value="Magnetospirillum">Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets)</option> + <option value="Mannheimia">Mannheimia (4 genomes, 1320 marker genes, 245 marker sets)</option> + <option value="Maribacter">Maribacter (3 genomes, 905 marker genes, 290 marker sets)</option> + <option value="Marinobacter">Marinobacter (8 genomes, 993 marker genes, 273 marker sets)</option> + <option value="Marinobacterium">Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets)</option> + <option value="Marinomonas">Marinomonas (4 genomes, 1256 marker genes, 320 marker sets)</option> + <option value="Mariprofundus">Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets)</option> + <option value="Maritimibacter">Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets)</option> + <option value="Massilia">Massilia (3 genomes, 1363 marker genes, 402 marker sets)</option> + <option value="Megamonas">Megamonas (3 genomes, 1113 marker genes, 288 marker sets)</option> + <option value="Megasphaera">Megasphaera (7 genomes, 696 marker genes, 211 marker sets)</option> + <option value="Meiothermus">Meiothermus (7 genomes, 852 marker genes, 456 marker sets)</option> + <option value="Mesoplasma">Mesoplasma (5 genomes, 409 marker genes, 104 marker sets)</option> + <option value="Mesorhizobium">Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets)</option> + <option value="Metallosphaera">Metallosphaera (3 genomes, 690 marker genes, 177 marker sets)</option> + <option value="Methanobacterium">Methanobacterium (3 genomes, 797 marker genes, 214 marker sets)</option> + <option value="Methanobrevibacter">Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets)</option> + <option value="Methanocaldococcus">Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets)</option> + <option value="Methanocella">Methanocella (3 genomes, 712 marker genes, 317 marker sets)</option> + <option value="Methanococcus">Methanococcus (7 genomes, 710 marker genes, 377 marker sets)</option> + <option value="Methanocorpusculum">Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets)</option> + <option value="Methanolobus">Methanolobus (2 genomes, 944 marker genes, 240 marker sets)</option> + <option value="Methanoplanus">Methanoplanus (2 genomes, 830 marker genes, 217 marker sets)</option> + <option value="Methanosaeta">Methanosaeta (3 genomes, 700 marker genes, 354 marker sets)</option> + <option value="Methanosarcina">Methanosarcina (3 genomes, 849 marker genes, 306 marker sets)</option> + <option value="Methanothermobacter">Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets)</option> + <option value="Methanothermococcus">Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets)</option> + <option value="Methanotorris">Methanotorris (2 genomes, 891 marker genes, 279 marker sets)</option> + <option value="Methylobacter">Methylobacter (2 genomes, 1294 marker genes, 436 marker sets)</option> + <option value="Methylobacterium">Methylobacterium (16 genomes, 606 marker genes, 394 marker sets)</option> + <option value="Methylococcus">Methylococcus (2 genomes, 1613 marker genes, 188 marker sets)</option> + <option value="Methylocystis">Methylocystis (3 genomes, 1172 marker genes, 334 marker sets)</option> + <option value="Methylomicrobium">Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets)</option> + <option value="Methylomonas">Methylomonas (4 genomes, 1325 marker genes, 423 marker sets)</option> + <option value="Methylophaga">Methylophaga (4 genomes, 1119 marker genes, 219 marker sets)</option> + <option value="Methylophilus">Methylophilus (4 genomes, 1346 marker genes, 180 marker sets)</option> + <option value="Methylopila">Methylopila (2 genomes, 1430 marker genes, 482 marker sets)</option> + <option value="Methylosarcina">Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets)</option> + <option value="Methylosinus">Methylosinus (3 genomes, 1300 marker genes, 501 marker sets)</option> + <option value="Methylotenera">Methylotenera (6 genomes, 1078 marker genes, 217 marker sets)</option> + <option value="Methyloversatilis">Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets)</option> + <option value="Methylovorus">Methylovorus (2 genomes, 1496 marker genes, 132 marker sets)</option> + <option value="Microbacterium">Microbacterium (11 genomes, 623 marker genes, 280 marker sets)</option> + <option value="Microcoleus">Microcoleus (2 genomes, 1191 marker genes, 754 marker sets)</option> + <option value="Micromonospora">Micromonospora (5 genomes, 921 marker genes, 349 marker sets)</option> + <option value="Microvirga">Microvirga (2 genomes, 1319 marker genes, 353 marker sets)</option> + <option value="Mobiluncus">Mobiluncus (8 genomes, 830 marker genes, 222 marker sets)</option> + <option value="Moorella">Moorella (2 genomes, 1125 marker genes, 231 marker sets)</option> + <option value="Moraxella">Moraxella (10 genomes, 915 marker genes, 523 marker sets)</option> + <option value="Morganella">Morganella (2 genomes, 1883 marker genes, 217 marker sets)</option> + <option value="Mycobacterium">Mycobacterium (100 genomes, 693 marker genes, 300 marker sets)</option> + <option value="Mycoplasma">Mycoplasma (83 genomes, 226 marker genes, 133 marker sets)</option> + <option value="Myroides">Myroides (7 genomes, 948 marker genes, 335 marker sets)</option> + <option value="Natrialba">Natrialba (3 genomes, 716 marker genes, 277 marker sets)</option> + <option value="Natrinema">Natrinema (3 genomes, 796 marker genes, 297 marker sets)</option> + <option value="Natronobacterium">Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets)</option> + <option value="Natronorubrum">Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets)</option> + <option value="Neisseria">Neisseria (47 genomes, 887 marker genes, 501 marker sets)</option> + <option value="Neorickettsia">Neorickettsia (2 genomes, 678 marker genes, 16 marker sets)</option> + <option value="Nesterenkonia">Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets)</option> + <option value="Niabella">Niabella (2 genomes, 1123 marker genes, 403 marker sets)</option> + <option value="Nisaea">Nisaea (2 genomes, 1230 marker genes, 423 marker sets)</option> + <option value="Nitratireductor">Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets)</option> + <option value="Nitratiruptor">Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets)</option> + <option value="Nitrobacter">Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets)</option> + <option value="Nitrosococcus">Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets)</option> + <option value="Nitrosomonas">Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets)</option> + <option value="Nitrosospira">Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets)</option> + <option value="Nocardia">Nocardia (6 genomes, 799 marker genes, 372 marker sets)</option> + <option value="Nocardioides">Nocardioides (8 genomes, 683 marker genes, 299 marker sets)</option> + <option value="Nocardiopsis">Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets)</option> + <option value="Nostoc">Nostoc (5 genomes, 995 marker genes, 585 marker sets)</option> + <option value="Novosphingobium">Novosphingobium (5 genomes, 907 marker genes, 296 marker sets)</option> + <option value="Oceanicaulis">Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets)</option> + <option value="Oceanicola">Oceanicola (4 genomes, 998 marker genes, 439 marker sets)</option> + <option value="Oceanimonas">Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets)</option> + <option value="Oceanobacillus">Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets)</option> + <option value="Oceanospirillum">Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets)</option> + <option value="Ochrobactrum">Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets)</option> + <option value="Octadecabacter">Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets)</option> + <option value="Odoribacter">Odoribacter (2 genomes, 1031 marker genes, 350 marker sets)</option> + <option value="Oenococcus">Oenococcus (13 genomes, 679 marker genes, 136 marker sets)</option> + <option value="Oligella">Oligella (2 genomes, 1242 marker genes, 186 marker sets)</option> + <option value="Oligotropha">Oligotropha (2 genomes, 1592 marker genes, 192 marker sets)</option> + <option value="Olleya">Olleya (2 genomes, 1165 marker genes, 249 marker sets)</option> + <option value="Olsenella">Olsenella (2 genomes, 781 marker genes, 213 marker sets)</option> + <option value="Oribacterium">Oribacterium (5 genomes, 555 marker genes, 211 marker sets)</option> + <option value="Orientia">Orientia (2 genomes, 651 marker genes, 94 marker sets)</option> + <option value="Ornithobacterium">Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets)</option> + <option value="Oscillatoria">Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets)</option> + <option value="Oxalobacter">Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets)</option> + <option value="Paenibacillus">Paenibacillus (33 genomes, 473 marker genes, 180 marker sets)</option> + <option value="Pantoea">Pantoea (10 genomes, 1403 marker genes, 316 marker sets)</option> + <option value="Parabacteroides">Parabacteroides (6 genomes, 970 marker genes, 371 marker sets)</option> + <option value="Parachlamydia">Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets)</option> + <option value="Paracoccus">Paracoccus (8 genomes, 917 marker genes, 340 marker sets)</option> + <option value="Paraprevotella">Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets)</option> + <option value="Parascardovia">Parascardovia (2 genomes, 908 marker genes, 87 marker sets)</option> + <option value="Pasteurella">Pasteurella (8 genomes, 1083 marker genes, 458 marker sets)</option> + <option value="Patulibacter">Patulibacter (2 genomes, 1012 marker genes, 347 marker sets)</option> + <option value="Pectobacterium">Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets)</option> + <option value="Pediococcus">Pediococcus (7 genomes, 664 marker genes, 140 marker sets)</option> + <option value="Pedobacter">Pedobacter (5 genomes, 742 marker genes, 322 marker sets)</option> + <option value="Pelobacter">Pelobacter (2 genomes, 958 marker genes, 487 marker sets)</option> + <option value="Pelodictyon">Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets)</option> + <option value="Pelosinus">Pelosinus (3 genomes, 1539 marker genes, 333 marker sets)</option> + <option value="Peptoniphilus">Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets)</option> + <option value="Peptostreptococcus">Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets)</option> + <option value="Persephonella">Persephonella (3 genomes, 1036 marker genes, 256 marker sets)</option> + <option value="Phaeobacter">Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets)</option> + <option value="Photobacterium">Photobacterium (6 genomes, 1105 marker genes, 326 marker sets)</option> + <option value="Photorhabdus">Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets)</option> + <option value="Planctomyces">Planctomyces (3 genomes, 790 marker genes, 552 marker sets)</option> + <option value="Planktothrix">Planktothrix (6 genomes, 1307 marker genes, 425 marker sets)</option> + <option value="Planococcus">Planococcus (2 genomes, 1321 marker genes, 253 marker sets)</option> + <option value="Pleomorphomonas">Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets)</option> + <option value="Pleurocapsa">Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets)</option> + <option value="Polaribacter">Polaribacter (3 genomes, 942 marker genes, 301 marker sets)</option> + <option value="Polaromonas">Polaromonas (4 genomes, 1001 marker genes, 336 marker sets)</option> + <option value="Polynucleobacter">Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets)</option> + <option value="Pontibacillus">Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets)</option> + <option value="Pontibacter">Pontibacter (2 genomes, 1139 marker genes, 379 marker sets)</option> + <option value="Porphyromonas">Porphyromonas (18 genomes, 569 marker genes, 346 marker sets)</option> + <option value="Prevotella">Prevotella (65 genomes, 522 marker genes, 281 marker sets)</option> + <option value="Prochlorococcus">Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets)</option> + <option value="Promicromonospora">Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets)</option> + <option value="Propionibacterium">Propionibacterium (35 genomes, 632 marker genes, 302 marker sets)</option> + <option value="Propionimicrobium">Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets)</option> + <option value="Proteus">Proteus (2 genomes, 1888 marker genes, 231 marker sets)</option> + <option value="Providencia">Providencia (6 genomes, 1517 marker genes, 302 marker sets)</option> + <option value="Pseudanabaena">Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets)</option> + <option value="Pseudoalteromonas">Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets)</option> + <option value="Pseudobutyrivibrio">Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets)</option> + <option value="Pseudoclavibacter">Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets)</option> + <option value="Pseudogulbenkiania">Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets)</option> + <option value="Pseudomonas">Pseudomonas (182 genomes, 833 marker genes, 312 marker sets)</option> + <option value="Pseudonocardia">Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets)</option> + <option value="Pseudovibrio">Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets)</option> + <option value="Pseudoxanthomonas">Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets)</option> + <option value="Psychrobacter">Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets)</option> + <option value="Psychroflexus">Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets)</option> + <option value="Psychromonas">Psychromonas (5 genomes, 1062 marker genes, 326 marker sets)</option> + <option value="Pyrobaculum">Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets)</option> + <option value="Pyrococcus">Pyrococcus (6 genomes, 654 marker genes, 266 marker sets)</option> + <option value="Rahnella">Rahnella (2 genomes, 1981 marker genes, 296 marker sets)</option> + <option value="Ralstonia">Ralstonia (14 genomes, 893 marker genes, 294 marker sets)</option> + <option value="Rheinheimera">Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets)</option> + <option value="Rhizobium">Rhizobium (40 genomes, 863 marker genes, 345 marker sets)</option> + <option value="Rhodanobacter">Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets)</option> + <option value="Rhodobacter">Rhodobacter (8 genomes, 992 marker genes, 372 marker sets)</option> + <option value="Rhodococcus">Rhodococcus (14 genomes, 715 marker genes, 302 marker sets)</option> + <option value="Rhodonellum">Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets)</option> + <option value="Rhodopirellula">Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets)</option> + <option value="Rhodopseudomonas">Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets)</option> + <option value="Rhodospirillum">Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets)</option> + <option value="Rhodothermus">Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets)</option> + <option value="Rickettsia">Rickettsia (43 genomes, 662 marker genes, 110 marker sets)</option> + <option value="Riemerella">Riemerella (6 genomes, 888 marker genes, 396 marker sets)</option> + <option value="Roseburia">Roseburia (2 genomes, 975 marker genes, 303 marker sets)</option> + <option value="Roseiflexus">Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets)</option> + <option value="Roseobacter">Roseobacter (7 genomes, 850 marker genes, 348 marker sets)</option> + <option value="Roseomonas">Roseomonas (2 genomes, 1576 marker genes, 318 marker sets)</option> + <option value="Roseovarius">Roseovarius (3 genomes, 1134 marker genes, 423 marker sets)</option> + <option value="Rothia">Rothia (6 genomes, 884 marker genes, 217 marker sets)</option> + <option value="Rubrivivax">Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets)</option> + <option value="Rubrobacter">Rubrobacter (2 genomes, 991 marker genes, 269 marker sets)</option> + <option value="Ruegeria">Ruegeria (7 genomes, 996 marker genes, 358 marker sets)</option> + <option value="Ruminococcus">Ruminococcus (13 genomes, 436 marker genes, 242 marker sets)</option> + <option value="Runella">Runella (3 genomes, 1097 marker genes, 525 marker sets)</option> + <option value="Saccharibacillus">Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets)</option> + <option value="Saccharomonospora">Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets)</option> + <option value="Salinicoccus">Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets)</option> + <option value="Salinimicrobium">Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets)</option> + <option value="Salinispora">Salinispora (45 genomes, 1031 marker genes, 284 marker sets)</option> + <option value="Salmonella">Salmonella (21 genomes, 1529 marker genes, 266 marker sets)</option> + <option value="Saprospira">Saprospira (2 genomes, 1147 marker genes, 326 marker sets)</option> + <option value="Sediminibacterium">Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets)</option> + <option value="Selenomonas">Selenomonas (21 genomes, 710 marker genes, 294 marker sets)</option> + <option value="Serratia">Serratia (13 genomes, 985 marker genes, 293 marker sets)</option> + <option value="Shewanella">Shewanella (26 genomes, 989 marker genes, 339 marker sets)</option> + <option value="Shigella">Shigella (34 genomes, 1437 marker genes, 348 marker sets)</option> + <option value="Slackia">Slackia (4 genomes, 616 marker genes, 193 marker sets)</option> + <option value="Solirubrobacter">Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets)</option> + <option value="Solobacterium">Solobacterium (2 genomes, 877 marker genes, 170 marker sets)</option> + <option value="Sphaerochaeta">Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets)</option> + <option value="Sphingobacterium">Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets)</option> + <option value="Sphingobium">Sphingobium (3 genomes, 1179 marker genes, 403 marker sets)</option> + <option value="Sphingomonas">Sphingomonas (11 genomes, 713 marker genes, 351 marker sets)</option> + <option value="Sphingopyxis">Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets)</option> + <option value="Spirochaeta">Spirochaeta (8 genomes, 487 marker genes, 211 marker sets)</option> + <option value="Spirosoma">Spirosoma (4 genomes, 993 marker genes, 460 marker sets)</option> + <option value="Sporosarcina">Sporosarcina (3 genomes, 999 marker genes, 269 marker sets)</option> + <option value="Staphylococcus">Staphylococcus (60 genomes, 773 marker genes, 178 marker sets)</option> + <option value="Staphylothermus">Staphylothermus (2 genomes, 676 marker genes, 104 marker sets)</option> + <option value="Stenotrophomonas">Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets)</option> + <option value="Streptococcus">Streptococcus (226 genomes, 551 marker genes, 259 marker sets)</option> + <option value="Streptomyces">Streptomyces (58 genomes, 506 marker genes, 264 marker sets)</option> + <option value="Sulfitobacter">Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets)</option> + <option value="Sulfobacillus">Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets)</option> + <option value="Sulfolobus">Sulfolobus (15 genomes, 621 marker genes, 152 marker sets)</option> + <option value="Sulfurihydrogenibium">Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets)</option> + <option value="Sulfurimonas">Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets)</option> + <option value="Sulfurospirillum">Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets)</option> + <option value="Sutterella">Sutterella (3 genomes, 935 marker genes, 232 marker sets)</option> + <option value="Synechococcus">Synechococcus (25 genomes, 554 marker genes, 425 marker sets)</option> + <option value="Synechocystis">Synechocystis (5 genomes, 1099 marker genes, 794 marker sets)</option> + <option value="Tannerella">Tannerella (2 genomes, 822 marker genes, 441 marker sets)</option> + <option value="Taylorella">Taylorella (4 genomes, 1069 marker genes, 71 marker sets)</option> + <option value="Tenacibaculum">Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets)</option> + <option value="Teredinibacter">Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets)</option> + <option value="Tetragenococcus">Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets)</option> + <option value="Thalassospira">Thalassospira (3 genomes, 1406 marker genes, 326 marker sets)</option> + <option value="Thauera">Thauera (6 genomes, 1175 marker genes, 334 marker sets)</option> + <option value="Thermacetogenium">Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets)</option> + <option value="Thermaerobacter">Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets)</option> + <option value="Thermanaerovibrio">Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets)</option> + <option value="Thermoanaerobacter">Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets)</option> + <option value="Thermoanaerobacterium">Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets)</option> + <option value="Thermobifida">Thermobifida (2 genomes, 1421 marker genes, 225 marker sets)</option> + <option value="Thermococcus">Thermococcus (9 genomes, 552 marker genes, 286 marker sets)</option> + <option value="Thermocrinis">Thermocrinis (2 genomes, 941 marker genes, 515 marker sets)</option> + <option value="Thermocrispum">Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets)</option> + <option value="Thermodesulfatator">Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets)</option> + <option value="Thermodesulfobacterium">Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets)</option> + <option value="Thermodesulfovibrio">Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets)</option> + <option value="Thermogladius">Thermogladius (2 genomes, 711 marker genes, 60 marker sets)</option> + <option value="Thermoplasma">Thermoplasma (2 genomes, 733 marker genes, 167 marker sets)</option> + <option value="Thermoproteus">Thermoproteus (3 genomes, 600 marker genes, 281 marker sets)</option> + <option value="Thermosipho">Thermosipho (2 genomes, 1009 marker genes, 148 marker sets)</option> + <option value="Thermotoga">Thermotoga (8 genomes, 768 marker genes, 325 marker sets)</option> + <option value="Thermus">Thermus (14 genomes, 841 marker genes, 311 marker sets)</option> + <option value="Thioalkalimicrobium">Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets)</option> + <option value="Thioalkalivibrio">Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets)</option> + <option value="Thiobacillus">Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets)</option> + <option value="Thiomicrospira">Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets)</option> + <option value="Thiomonas">Thiomonas (3 genomes, 1202 marker genes, 366 marker sets)</option> + <option value="Thiothrix">Thiothrix (4 genomes, 1003 marker genes, 417 marker sets)</option> + <option value="Tolumonas">Tolumonas (2 genomes, 1431 marker genes, 200 marker sets)</option> + <option value="Treponema">Treponema (28 genomes, 326 marker genes, 173 marker sets)</option> + <option value="Turicibacter">Turicibacter (2 genomes, 1183 marker genes, 236 marker sets)</option> + <option value="Ureaplasma">Ureaplasma (15 genomes, 372 marker genes, 51 marker sets)</option> + <option value="Variovorax">Variovorax (7 genomes, 1114 marker genes, 351 marker sets)</option> + <option value="Veillonella">Veillonella (13 genomes, 757 marker genes, 219 marker sets)</option> + <option value="Verrucomicrobium">Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets)</option> + <option value="Vibrio">Vibrio (70 genomes, 1084 marker genes, 381 marker sets)</option> + <option value="Vulcanisaeta">Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets)</option> + <option value="Weissella">Weissella (6 genomes, 534 marker genes, 171 marker sets)</option> + <option value="Wigglesworthia">Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets)</option> + <option value="Wohlfahrtiimonas">Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets)</option> + <option value="Wolbachia">Wolbachia (8 genomes, 427 marker genes, 275 marker sets)</option> + <option value="Xanthobacter">Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets)</option> + <option value="Xanthomonas">Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets)</option> + <option value="Xenorhabdus">Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets)</option> + <option value="Xylella">Xylella (10 genomes, 1207 marker genes, 178 marker sets)</option> + <option value="Yersinia">Yersinia (35 genomes, 1383 marker genes, 341 marker sets)</option> + <option value="Zymomonas">Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)</option> </param> </when> <when value="species"> <param name="taxon" type="select" label="Taxon of interest" > - <options from_data_table="species_taxons"> - <validator message="No taxon database is available" type="no_options" /> - </options> + <option value="Acetobacter pasteurianus">Acetobacter pasteurianus (9 genomes, 1384 marker genes, 160 marker sets)</option> + <option value="Achromobacter piechaudii">Achromobacter piechaudii (2 genomes, 1606 marker genes, 428 marker sets)</option> + <option value="Achromobacter xylosoxidans">Achromobacter xylosoxidans (2 genomes, 1503 marker genes, 445 marker sets)</option> + <option value="Acidaminococcus intestini">Acidaminococcus intestini (2 genomes, 1109 marker genes, 140 marker sets)</option> + <option value="Acidithiobacillus caldus">Acidithiobacillus caldus (2 genomes, 1196 marker genes, 153 marker sets)</option> + <option value="Acidithiobacillus ferrooxidans">Acidithiobacillus ferrooxidans (2 genomes, 1293 marker genes, 128 marker sets)</option> + <option value="Acidovorax avenae">Acidovorax avenae (2 genomes, 1633 marker genes, 327 marker sets)</option> + <option value="Acinetobacter baumanni">Acinetobacter baumanni (5 genomes, 1413 marker genes, 231 marker sets)</option> + <option value="Acinetobacter baumannii">Acinetobacter baumannii (20 genomes, 1018 marker genes, 298 marker sets)</option> + <option value="Acinetobacter baylyi">Acinetobacter baylyi (2 genomes, 1608 marker genes, 195 marker sets)</option> + <option value="Acinetobacter calcoaceticus">Acinetobacter calcoaceticus (5 genomes, 1444 marker genes, 252 marker sets)</option> + <option value="Acinetobacter johnsonii">Acinetobacter johnsonii (2 genomes, 1439 marker genes, 204 marker sets)</option> + <option value="Acinetobacter junii">Acinetobacter junii (4 genomes, 1336 marker genes, 222 marker sets)</option> + <option value="Acinetobacter lwoffii">Acinetobacter lwoffii (3 genomes, 1363 marker genes, 221 marker sets)</option> + <option value="Acinetobacter nosocomialis">Acinetobacter nosocomialis (2 genomes, 1542 marker genes, 214 marker sets)</option> + <option value="Acinetobacter radioresistens">Acinetobacter radioresistens (5 genomes, 1354 marker genes, 199 marker sets)</option> + <option value="Actinobacillus pleuropneumoniae">Actinobacillus pleuropneumoniae (13 genomes, 1332 marker genes, 210 marker sets)</option> + <option value="Actinobaculum schaalii">Actinobaculum schaalii (2 genomes, 951 marker genes, 128 marker sets)</option> + <option value="Actinomyces graevenitzii">Actinomyces graevenitzii (2 genomes, 1014 marker genes, 144 marker sets)</option> + <option value="Actinomyces naeslundii">Actinomyces naeslundii (2 genomes, 1068 marker genes, 299 marker sets)</option> + <option value="Actinomyces neuii">Actinomyces neuii (2 genomes, 1053 marker genes, 132 marker sets)</option> + <option value="Actinomyces odontolyticus">Actinomyces odontolyticus (2 genomes, 1061 marker genes, 179 marker sets)</option> + <option value="Aeromonas hydrophila">Aeromonas hydrophila (3 genomes, 1847 marker genes, 312 marker sets)</option> + <option value="Aeromonas veronii">Aeromonas veronii (6 genomes, 1752 marker genes, 329 marker sets)</option> + <option value="Aggregatibacter actinomycetemcomitans">Aggregatibacter actinomycetemcomitans (10 genomes, 1164 marker genes, 217 marker sets)</option> + <option value="Agrobacterium tumefaciens">Agrobacterium tumefaciens (2 genomes, 1574 marker genes, 278 marker sets)</option> + <option value="Alicycliphilus denitrificans">Alicycliphilus denitrificans (2 genomes, 1650 marker genes, 258 marker sets)</option> + <option value="Alicyclobacillus acidocaldarius">Alicyclobacillus acidocaldarius (2 genomes, 1329 marker genes, 157 marker sets)</option> + <option value="Alloscardovia omnicolens">Alloscardovia omnicolens (2 genomes, 950 marker genes, 116 marker sets)</option> + <option value="Alteromonas macleodii">Alteromonas macleodii (4 genomes, 1539 marker genes, 274 marker sets)</option> + <option value="Amycolatopsis mediterranei">Amycolatopsis mediterranei (3 genomes, 1557 marker genes, 526 marker sets)</option> + <option value="Anabaena circinalis">Anabaena circinalis (2 genomes, 1357 marker genes, 362 marker sets)</option> + <option value="Anaerococcus prevotii">Anaerococcus prevotii (2 genomes, 900 marker genes, 143 marker sets)</option> + <option value="Anaeromyxobacter dehalogenans">Anaeromyxobacter dehalogenans (2 genomes, 1441 marker genes, 335 marker sets)</option> + <option value="Anoxybacillus flavithermus">Anoxybacillus flavithermus (2 genomes, 1366 marker genes, 163 marker sets)</option> + <option value="Archaeoglobus fulgidus">Archaeoglobus fulgidus (2 genomes, 975 marker genes, 111 marker sets)</option> + <option value="Arcobacter butzleri">Arcobacter butzleri (4 genomes, 1067 marker genes, 144 marker sets)</option> + <option value="Arthrobacter nicotinovorans">Arthrobacter nicotinovorans (2 genomes, 1382 marker genes, 287 marker sets)</option> + <option value="Arthrospira platensis">Arthrospira platensis (2 genomes, 1432 marker genes, 419 marker sets)</option> + <option value="Atopobium vaginae">Atopobium vaginae (2 genomes, 714 marker genes, 165 marker sets)</option> + <option value="Azotobacter vinelandii">Azotobacter vinelandii (3 genomes, 1930 marker genes, 269 marker sets)</option> + <option value="Bacillus amyloliquefaciens">Bacillus amyloliquefaciens (9 genomes, 1568 marker genes, 226 marker sets)</option> + <option value="Bacillus anthracis">Bacillus anthracis (11 genomes, 1465 marker genes, 354 marker sets)</option> + <option value="Bacillus cereus">Bacillus cereus (20 genomes, 1114 marker genes, 319 marker sets)</option> + <option value="Bacillus coagulans">Bacillus coagulans (4 genomes, 1365 marker genes, 245 marker sets)</option> + <option value="Bacillus licheniformis">Bacillus licheniformis (4 genomes, 1711 marker genes, 246 marker sets)</option> + <option value="Bacillus megaterium">Bacillus megaterium (3 genomes, 1495 marker genes, 292 marker sets)</option> + <option value="Bacillus methanolicus">Bacillus methanolicus (2 genomes, 1444 marker genes, 206 marker sets)</option> + <option value="Bacillus pumilus">Bacillus pumilus (2 genomes, 1707 marker genes, 218 marker sets)</option> + <option value="Bacillus subtilis">Bacillus subtilis (14 genomes, 1489 marker genes, 247 marker sets)</option> + <option value="Bacillus thuringiensis">Bacillus thuringiensis (11 genomes, 1205 marker genes, 357 marker sets)</option> + <option value="Bacteroides caccae">Bacteroides caccae (2 genomes, 1239 marker genes, 256 marker sets)</option> + <option value="Bacteroides dorei">Bacteroides dorei (4 genomes, 1172 marker genes, 271 marker sets)</option> + <option value="Bacteroides eggerthii">Bacteroides eggerthii (2 genomes, 1171 marker genes, 205 marker sets)</option> + <option value="Bacteroides fragilis">Bacteroides fragilis (10 genomes, 1128 marker genes, 303 marker sets)</option> + <option value="Bacteroides massiliensis">Bacteroides massiliensis (2 genomes, 1340 marker genes, 274 marker sets)</option> + <option value="Bacteroides ovatus">Bacteroides ovatus (6 genomes, 1115 marker genes, 317 marker sets)</option> + <option value="Bacteroides stercoris">Bacteroides stercoris (2 genomes, 1202 marker genes, 210 marker sets)</option> + <option value="Bacteroides thetaiotaomicron">Bacteroides thetaiotaomicron (6 genomes, 1177 marker genes, 313 marker sets)</option> + <option value="Bacteroides uniformis">Bacteroides uniformis (2 genomes, 1214 marker genes, 253 marker sets)</option> + <option value="Bacteroides vulgatus">Bacteroides vulgatus (5 genomes, 1162 marker genes, 307 marker sets)</option> + <option value="Bacteroides xylanisolvens">Bacteroides xylanisolvens (12 genomes, 1025 marker genes, 325 marker sets)</option> + <option value="Bankia setacea">Bankia setacea (2 genomes, 1388 marker genes, 332 marker sets)</option> + <option value="Bartonella clarridgeiae">Bartonella clarridgeiae (2 genomes, 990 marker genes, 52 marker sets)</option> + <option value="Bartonella doshiae">Bartonella doshiae (2 genomes, 1022 marker genes, 73 marker sets)</option> + <option value="Bartonella elizabethae">Bartonella elizabethae (3 genomes, 1021 marker genes, 88 marker sets)</option> + <option value="Bartonella grahamii">Bartonella grahamii (2 genomes, 1010 marker genes, 95 marker sets)</option> + <option value="Bartonella quintana">Bartonella quintana (2 genomes, 945 marker genes, 55 marker sets)</option> + <option value="Bartonella tamiae">Bartonella tamiae (2 genomes, 1379 marker genes, 94 marker sets)</option> + <option value="Bartonella vinsonii">Bartonella vinsonii (4 genomes, 964 marker genes, 71 marker sets)</option> + <option value="Bartonella washoensis">Bartonella washoensis (2 genomes, 1014 marker genes, 79 marker sets)</option> + <option value="Bdellovibrio bacteriovorus">Bdellovibrio bacteriovorus (2 genomes, 1015 marker genes, 305 marker sets)</option> + <option value="Bifidobacterium adolescentis">Bifidobacterium adolescentis (3 genomes, 886 marker genes, 116 marker sets)</option> + <option value="Bifidobacterium animalis">Bifidobacterium animalis (9 genomes, 871 marker genes, 113 marker sets)</option> + <option value="Bifidobacterium bifidum">Bifidobacterium bifidum (5 genomes, 952 marker genes, 140 marker sets)</option> + <option value="Bifidobacterium breve">Bifidobacterium breve (6 genomes, 871 marker genes, 166 marker sets)</option> + <option value="Bifidobacterium dentium">Bifidobacterium dentium (3 genomes, 991 marker genes, 156 marker sets)</option> + <option value="Bifidobacterium longum">Bifidobacterium longum (15 genomes, 750 marker genes, 214 marker sets)</option> + <option value="Bifidobacterium pseudolongum">Bifidobacterium pseudolongum (2 genomes, 933 marker genes, 123 marker sets)</option> + <option value="Blautia producta">Blautia producta (2 genomes, 1444 marker genes, 376 marker sets)</option> + <option value="Blautia wexlerae">Blautia wexlerae (2 genomes, 1092 marker genes, 270 marker sets)</option> + <option value="Bordetella holmesii">Bordetella holmesii (2 genomes, 1523 marker genes, 215 marker sets)</option> + <option value="Bordetella pertussis">Bordetella pertussis (2 genomes, 1599 marker genes, 225 marker sets)</option> + <option value="Borrelia afzelii">Borrelia afzelii (2 genomes, 598 marker genes, 23 marker sets)</option> + <option value="Borrelia burgdorferi">Borrelia burgdorferi (7 genomes, 567 marker genes, 36 marker sets)</option> + <option value="Borrelia garinii">Borrelia garinii (3 genomes, 596 marker genes, 51 marker sets)</option> + <option value="Brachyspira hyodysenteriae">Brachyspira hyodysenteriae (2 genomes, 1143 marker genes, 201 marker sets)</option> + <option value="Brachyspira pilosicoli">Brachyspira pilosicoli (4 genomes, 951 marker genes, 213 marker sets)</option> + <option value="Bradyrhizobium elkanii">Bradyrhizobium elkanii (6 genomes, 1117 marker genes, 415 marker sets)</option> + <option value="Bradyrhizobium japonicum">Bradyrhizobium japonicum (9 genomes, 1153 marker genes, 389 marker sets)</option> + <option value="Brevibacillus laterosporus">Brevibacillus laterosporus (2 genomes, 1538 marker genes, 311 marker sets)</option> + <option value="Brucella abortus">Brucella abortus (20 genomes, 1513 marker genes, 206 marker sets)</option> + <option value="Brucella canis">Brucella canis (7 genomes, 1561 marker genes, 163 marker sets)</option> + <option value="Brucella ceti">Brucella ceti (4 genomes, 1586 marker genes, 299 marker sets)</option> + <option value="Brucella melitensis">Brucella melitensis (20 genomes, 1435 marker genes, 270 marker sets)</option> + <option value="Brucella ovis">Brucella ovis (9 genomes, 1599 marker genes, 181 marker sets)</option> + <option value="Brucella pinnipedialis">Brucella pinnipedialis (2 genomes, 1625 marker genes, 189 marker sets)</option> + <option value="Brucella suis">Brucella suis (16 genomes, 1524 marker genes, 276 marker sets)</option> + <option value="Buchnera aphidicola">Buchnera aphidicola (10 genomes, 380 marker genes, 35 marker sets)</option> + <option value="Burkholderia cenocepacia">Burkholderia cenocepacia (5 genomes, 1585 marker genes, 398 marker sets)</option> + <option value="Burkholderia cepacia">Burkholderia cepacia (5 genomes, 1353 marker genes, 330 marker sets)</option> + <option value="Burkholderia mallei">Burkholderia mallei (9 genomes, 1503 marker genes, 397 marker sets)</option> + <option value="Burkholderia mimosarum">Burkholderia mimosarum (2 genomes, 1813 marker genes, 442 marker sets)</option> + <option value="Burkholderia multivorans">Burkholderia multivorans (4 genomes, 1688 marker genes, 361 marker sets)</option> + <option value="Burkholderia pseudomallei">Burkholderia pseudomallei (12 genomes, 1626 marker genes, 455 marker sets)</option> + <option value="Butyrivibrio fibrisolvens">Butyrivibrio fibrisolvens (4 genomes, 1083 marker genes, 302 marker sets)</option> + <option value="Butyrivibrio proteoclasticus">Butyrivibrio proteoclasticus (2 genomes, 1016 marker genes, 327 marker sets)</option> + <option value="Caldicellulosiruptor kristjanssonii">Caldicellulosiruptor kristjanssonii (3 genomes, 1326 marker genes, 159 marker sets)</option> + <option value="Campylobacter coli">Campylobacter coli (20 genomes, 955 marker genes, 188 marker sets)</option> + <option value="Campylobacter curvus">Campylobacter curvus (2 genomes, 1090 marker genes, 92 marker sets)</option> + <option value="Campylobacter fetus">Campylobacter fetus (2 genomes, 1143 marker genes, 80 marker sets)</option> + <option value="Campylobacter jejuni">Campylobacter jejuni (20 genomes, 903 marker genes, 161 marker sets)</option> + <option value="Campylobacter showae">Campylobacter showae (2 genomes, 1098 marker genes, 118 marker sets)</option> + <option value="Campylobacter upsaliensis">Campylobacter upsaliensis (3 genomes, 1032 marker genes, 103 marker sets)</option> + <option value="Candidatus Pelagibacter ubique">Candidatus Pelagibacter ubique (10 genomes, 779 marker genes, 128 marker sets)</option> + <option value="Candidatus Pelagibacter-like SAR11">Candidatus Pelagibacter-like SAR11 (3 genomes, 911 marker genes, 76 marker sets)</option> + <option value="Capnocytophaga ochracea">Capnocytophaga ochracea (3 genomes, 1077 marker genes, 205 marker sets)</option> + <option value="Caulobacter crescentus">Caulobacter crescentus (2 genomes, 1670 marker genes, 221 marker sets)</option> + <option value="Cellulomonas flavigena">Cellulomonas flavigena (2 genomes, 1110 marker genes, 325 marker sets)</option> + <option value="Chlamydia muridarum">Chlamydia muridarum (3 genomes, 683 marker genes, 35 marker sets)</option> + <option value="Chlamydia psittaci">Chlamydia psittaci (20 genomes, 613 marker genes, 74 marker sets)</option> + <option value="Chlamydia trachomatis">Chlamydia trachomatis (20 genomes, 641 marker genes, 41 marker sets)</option> + <option value="Chlamydophila pneumoniae">Chlamydophila pneumoniae (5 genomes, 683 marker genes, 57 marker sets)</option> + <option value="Chlamydophila psittaci">Chlamydophila psittaci (7 genomes, 706 marker genes, 40 marker sets)</option> + <option value="Chlorobium phaeobacteroides">Chlorobium phaeobacteroides (2 genomes, 1081 marker genes, 255 marker sets)</option> + <option value="Citrobacter freundii">Citrobacter freundii (3 genomes, 1937 marker genes, 327 marker sets)</option> + <option value="Clavibacter michiganensis">Clavibacter michiganensis (2 genomes, 1152 marker genes, 228 marker sets)</option> + <option value="Clostridium acetobutylicum">Clostridium acetobutylicum (3 genomes, 1498 marker genes, 242 marker sets)</option> + <option value="Clostridium beijerinckii">Clostridium beijerinckii (2 genomes, 1312 marker genes, 318 marker sets)</option> + <option value="Clostridium bolteae">Clostridium bolteae (5 genomes, 1147 marker genes, 316 marker sets)</option> + <option value="Clostridium botulinum">Clostridium botulinum (15 genomes, 653 marker genes, 197 marker sets)</option> + <option value="Clostridium butyricum">Clostridium butyricum (3 genomes, 1300 marker genes, 285 marker sets)</option> + <option value="Clostridium clariflavum">Clostridium clariflavum (2 genomes, 1344 marker genes, 273 marker sets)</option> + <option value="Clostridium clostridioforme">Clostridium clostridioforme (7 genomes, 995 marker genes, 304 marker sets)</option> + <option value="Clostridium difficile">Clostridium difficile (20 genomes, 1098 marker genes, 329 marker sets)</option> + <option value="Clostridium glycolicum">Clostridium glycolicum (2 genomes, 1385 marker genes, 238 marker sets)</option> + <option value="Clostridium kluyveri">Clostridium kluyveri (2 genomes, 1377 marker genes, 212 marker sets)</option> + <option value="Clostridium pasteurianum">Clostridium pasteurianum (2 genomes, 1184 marker genes, 276 marker sets)</option> + <option value="Clostridium perfringens">Clostridium perfringens (3 genomes, 1152 marker genes, 185 marker sets)</option> + <option value="Clostridium sporogenes">Clostridium sporogenes (2 genomes, 1302 marker genes, 242 marker sets)</option> + <option value="Clostridium symbiosum">Clostridium symbiosum (2 genomes, 1222 marker genes, 322 marker sets)</option> + <option value="Clostridium thermocellum">Clostridium thermocellum (5 genomes, 1325 marker genes, 239 marker sets)</option> + <option value="Comamonas testosteroni">Comamonas testosteroni (3 genomes, 1563 marker genes, 349 marker sets)</option> + <option value="Corynebacterium accolens">Corynebacterium accolens (2 genomes, 1192 marker genes, 206 marker sets)</option> + <option value="Corynebacterium aurimucosum">Corynebacterium aurimucosum (2 genomes, 1240 marker genes, 186 marker sets)</option> + <option value="Corynebacterium diphtheriae">Corynebacterium diphtheriae (15 genomes, 1041 marker genes, 134 marker sets)</option> + <option value="Corynebacterium efficiens">Corynebacterium efficiens (2 genomes, 1320 marker genes, 210 marker sets)</option> + <option value="Corynebacterium glucuronolyticum">Corynebacterium glucuronolyticum (3 genomes, 1217 marker genes, 176 marker sets)</option> + <option value="Corynebacterium glutamicum">Corynebacterium glutamicum (6 genomes, 1184 marker genes, 228 marker sets)</option> + <option value="Corynebacterium halotolerans">Corynebacterium halotolerans (2 genomes, 1353 marker genes, 183 marker sets)</option> + <option value="Corynebacterium jeikeium">Corynebacterium jeikeium (2 genomes, 1143 marker genes, 157 marker sets)</option> + <option value="Corynebacterium matruchotii">Corynebacterium matruchotii (2 genomes, 1191 marker genes, 181 marker sets)</option> + <option value="Corynebacterium pseudotuberculosis">Corynebacterium pseudotuberculosis (14 genomes, 1001 marker genes, 123 marker sets)</option> + <option value="Corynebacterium ulcerans">Corynebacterium ulcerans (3 genomes, 1221 marker genes, 112 marker sets)</option> + <option value="Corynebacterium urealyticum">Corynebacterium urealyticum (2 genomes, 1146 marker genes, 117 marker sets)</option> + <option value="Coxiella burnetii">Coxiella burnetii (5 genomes, 1047 marker genes, 146 marker sets)</option> + <option value="Cupriavidus metallidurans">Cupriavidus metallidurans (2 genomes, 1706 marker genes, 419 marker sets)</option> + <option value="Cupriavidus necator">Cupriavidus necator (2 genomes, 1517 marker genes, 379 marker sets)</option> + <option value="Cupriavidus taiwanensis">Cupriavidus taiwanensis (3 genomes, 1681 marker genes, 365 marker sets)</option> + <option value="Dechloromonas agitata">Dechloromonas agitata (2 genomes, 1533 marker genes, 220 marker sets)</option> + <option value="Dehalococcoides mccartyi">Dehalococcoides mccartyi (4 genomes, 803 marker genes, 50 marker sets)</option> + <option value="Deinococcus radiodurans">Deinococcus radiodurans (2 genomes, 1383 marker genes, 206 marker sets)</option> + <option value="Delftia acidovorans">Delftia acidovorans (2 genomes, 1757 marker genes, 421 marker sets)</option> + <option value="Desulfovibrio africanus">Desulfovibrio africanus (3 genomes, 1285 marker genes, 284 marker sets)</option> + <option value="Desulfovibrio alaskensis">Desulfovibrio alaskensis (2 genomes, 1327 marker genes, 223 marker sets)</option> + <option value="Desulfovibrio desulfuricans">Desulfovibrio desulfuricans (2 genomes, 941 marker genes, 423 marker sets)</option> + <option value="Desulfovibrio vulgaris">Desulfovibrio vulgaris (3 genomes, 1187 marker genes, 344 marker sets)</option> + <option value="Dickeya dadantii">Dickeya dadantii (3 genomes, 1728 marker genes, 307 marker sets)</option> + <option value="Dorea longicatena">Dorea longicatena (2 genomes, 1005 marker genes, 208 marker sets)</option> + <option value="Edwardsiella tarda">Edwardsiella tarda (2 genomes, 1903 marker genes, 174 marker sets)</option> + <option value="Ehrlichia ruminantium">Ehrlichia ruminantium (3 genomes, 760 marker genes, 58 marker sets)</option> + <option value="Elizabethkingia anophelis">Elizabethkingia anophelis (3 genomes, 1251 marker genes, 240 marker sets)</option> + <option value="Ensifer fredii">Ensifer fredii (2 genomes, 1548 marker genes, 357 marker sets)</option> + <option value="Ensifer medicae">Ensifer medicae (5 genomes, 1601 marker genes, 343 marker sets)</option> + <option value="Ensifer meliloti">Ensifer meliloti (15 genomes, 1320 marker genes, 381 marker sets)</option> + <option value="Enterobacter aerogenes">Enterobacter aerogenes (2 genomes, 2126 marker genes, 298 marker sets)</option> + <option value="Enterobacter cloacae">Enterobacter cloacae (6 genomes, 1787 marker genes, 306 marker sets)</option> + <option value="Enterococcus casseliflavus">Enterococcus casseliflavus (4 genomes, 1174 marker genes, 221 marker sets)</option> + <option value="Enterococcus faecalis">Enterococcus faecalis (20 genomes, 792 marker genes, 298 marker sets)</option> + <option value="Enterococcus faecium">Enterococcus faecium (20 genomes, 885 marker genes, 257 marker sets)</option> + <option value="Enterococcus gallinarum">Enterococcus gallinarum (2 genomes, 1257 marker genes, 191 marker sets)</option> + <option value="Eremococcus coleocola">Eremococcus coleocola (2 genomes, 922 marker genes, 109 marker sets)</option> + <option value="Erwinia amylovora">Erwinia amylovora (3 genomes, 1878 marker genes, 177 marker sets)</option> + <option value="Erwinia pyrifoliae">Erwinia pyrifoliae (2 genomes, 1942 marker genes, 184 marker sets)</option> + <option value="Escherichia coli">Escherichia coli (20 genomes, 1628 marker genes, 307 marker sets)</option> + <option value="Escherichia fergusonii">Escherichia fergusonii (2 genomes, 2134 marker genes, 277 marker sets)</option> + <option value="Eubacterium cellulosolvens">Eubacterium cellulosolvens (2 genomes, 1078 marker genes, 198 marker sets)</option> + <option value="Eubacterium saburreum">Eubacterium saburreum (2 genomes, 1186 marker genes, 223 marker sets)</option> + <option value="Exiguobacterium sibiricum">Exiguobacterium sibiricum (2 genomes, 1429 marker genes, 175 marker sets)</option> + <option value="Exiguobacterium undae">Exiguobacterium undae (2 genomes, 1484 marker genes, 173 marker sets)</option> + <option value="Facklamia hominis">Facklamia hominis (2 genomes, 955 marker genes, 100 marker sets)</option> + <option value="Finegoldia magna">Finegoldia magna (5 genomes, 878 marker genes, 111 marker sets)</option> + <option value="Francisella noatunensis">Francisella noatunensis (6 genomes, 904 marker genes, 235 marker sets)</option> + <option value="Francisella noatunensis noatunensis">Francisella noatunensis noatunensis (2 genomes, 1070 marker genes, 209 marker sets)</option> + <option value="Francisella novicida">Francisella novicida (4 genomes, 1052 marker genes, 152 marker sets)</option> + <option value="Francisella philomiragia">Francisella philomiragia (6 genomes, 1127 marker genes, 132 marker sets)</option> + <option value="Francisella tularensis">Francisella tularensis (20 genomes, 850 marker genes, 176 marker sets)</option> + <option value="Fusobacterium necrophorum">Fusobacterium necrophorum (2 genomes, 1080 marker genes, 117 marker sets)</option> + <option value="Fusobacterium nucleatum">Fusobacterium nucleatum (6 genomes, 884 marker genes, 256 marker sets)</option> + <option value="Gallibacterium anatis">Gallibacterium anatis (2 genomes, 1519 marker genes, 168 marker sets)</option> + <option value="Gardnerella vaginalis">Gardnerella vaginalis (14 genomes, 621 marker genes, 237 marker sets)</option> + <option value="Gemella haemolysans">Gemella haemolysans (2 genomes, 961 marker genes, 126 marker sets)</option> + <option value="Geobacillus debilis">Geobacillus debilis (2 genomes, 1380 marker genes, 195 marker sets)</option> + <option value="Geobacter sulfurreducens">Geobacter sulfurreducens (2 genomes, 1487 marker genes, 199 marker sets)</option> + <option value="Glaciecola agarilytica">Glaciecola agarilytica (2 genomes, 1802 marker genes, 312 marker sets)</option> + <option value="Gluconacetobacter diazotrophicus">Gluconacetobacter diazotrophicus (2 genomes, 1506 marker genes, 190 marker sets)</option> + <option value="Gordonia amicalis">Gordonia amicalis (2 genomes, 1448 marker genes, 324 marker sets)</option> + <option value="Gordonia polyisoprenivorans">Gordonia polyisoprenivorans (3 genomes, 1452 marker genes, 366 marker sets)</option> + <option value="Haemophilus ducreyi">Haemophilus ducreyi (4 genomes, 1128 marker genes, 128 marker sets)</option> + <option value="Haemophilus haemolyticus">Haemophilus haemolyticus (3 genomes, 1281 marker genes, 149 marker sets)</option> + <option value="Haemophilus influenzae">Haemophilus influenzae (17 genomes, 924 marker genes, 157 marker sets)</option> + <option value="Haemophilus parainfluenzae">Haemophilus parainfluenzae (5 genomes, 1176 marker genes, 631 marker sets)</option> + <option value="Haemophilus parasuis">Haemophilus parasuis (2 genomes, 1385 marker genes, 136 marker sets)</option> + <option value="Halalkalicoccus jeotgali">Halalkalicoccus jeotgali (2 genomes, 1003 marker genes, 212 marker sets)</option> + <option value="Haloarcula californiae">Haloarcula californiae (2 genomes, 1047 marker genes, 260 marker sets)</option> + <option value="Haloarcula vallismortis">Haloarcula vallismortis (2 genomes, 1075 marker genes, 244 marker sets)</option> + <option value="Halobiforma lacisalsi">Halobiforma lacisalsi (2 genomes, 1026 marker genes, 320 marker sets)</option> + <option value="Haloferax denitrificans">Haloferax denitrificans (2 genomes, 1052 marker genes, 231 marker sets)</option> + <option value="Haloferax mucosum">Haloferax mucosum (2 genomes, 1030 marker genes, 193 marker sets)</option> + <option value="Haloferax sulfurifontis">Haloferax sulfurifontis (2 genomes, 1054 marker genes, 237 marker sets)</option> + <option value="Haloferax volcanii">Haloferax volcanii (3 genomes, 864 marker genes, 230 marker sets)</option> + <option value="Haloquadratum walsbyi">Haloquadratum walsbyi (3 genomes, 798 marker genes, 192 marker sets)</option> + <option value="Helicobacter cetorum">Helicobacter cetorum (2 genomes, 927 marker genes, 162 marker sets)</option> + <option value="Helicobacter pylori">Helicobacter pylori (20 genomes, 773 marker genes, 143 marker sets)</option> + <option value="Histophilus somni">Histophilus somni (2 genomes, 1341 marker genes, 98 marker sets)</option> + <option value="Hydrogenobacter thermophilus">Hydrogenobacter thermophilus (2 genomes, 1116 marker genes, 52 marker sets)</option> + <option value="Hyphomicrobium denitrificans">Hyphomicrobium denitrificans (2 genomes, 1390 marker genes, 196 marker sets)</option> + <option value="Isoptericola variabilis">Isoptericola variabilis (2 genomes, 1351 marker genes, 168 marker sets)</option> + <option value="Jonquetella anthropi">Jonquetella anthropi (2 genomes, 987 marker genes, 78 marker sets)</option> + <option value="Kandleria vitulina">Kandleria vitulina (3 genomes, 1026 marker genes, 154 marker sets)</option> + <option value="Klebsiella oxytoca">Klebsiella oxytoca (5 genomes, 1725 marker genes, 377 marker sets)</option> + <option value="Klebsiella pneumoniae">Klebsiella pneumoniae (20 genomes, 1598 marker genes, 383 marker sets)</option> + <option value="Lachnobacterium bovis">Lachnobacterium bovis (2 genomes, 1164 marker genes, 173 marker sets)</option> + <option value="Lachnospira multipara">Lachnospira multipara (3 genomes, 1045 marker genes, 196 marker sets)</option> + <option value="Lactobacillus acidophilus">Lactobacillus acidophilus (3 genomes, 800 marker genes, 127 marker sets)</option> + <option value="Lactobacillus amylovorus">Lactobacillus amylovorus (2 genomes, 865 marker genes, 112 marker sets)</option> + <option value="Lactobacillus brevis">Lactobacillus brevis (4 genomes, 752 marker genes, 203 marker sets)</option> + <option value="Lactobacillus buchneri">Lactobacillus buchneri (5 genomes, 853 marker genes, 186 marker sets)</option> + <option value="Lactobacillus casei">Lactobacillus casei (16 genomes, 772 marker genes, 222 marker sets)</option> + <option value="Lactobacillus crispatus">Lactobacillus crispatus (8 genomes, 762 marker genes, 178 marker sets)</option> + <option value="Lactobacillus delbrueckii">Lactobacillus delbrueckii (7 genomes, 742 marker genes, 159 marker sets)</option> + <option value="Lactobacillus fermentum">Lactobacillus fermentum (3 genomes, 949 marker genes, 129 marker sets)</option> + <option value="Lactobacillus gasseri">Lactobacillus gasseri (5 genomes, 692 marker genes, 131 marker sets)</option> + <option value="Lactobacillus helveticus">Lactobacillus helveticus (4 genomes, 731 marker genes, 148 marker sets)</option> + <option value="Lactobacillus iners">Lactobacillus iners (15 genomes, 639 marker genes, 125 marker sets)</option> + <option value="Lactobacillus jensenii">Lactobacillus jensenii (5 genomes, 813 marker genes, 106 marker sets)</option> + <option value="Lactobacillus johnsonii">Lactobacillus johnsonii (4 genomes, 777 marker genes, 130 marker sets)</option> + <option value="Lactobacillus paracasei">Lactobacillus paracasei (3 genomes, 1022 marker genes, 225 marker sets)</option> + <option value="Lactobacillus reuteri">Lactobacillus reuteri (9 genomes, 829 marker genes, 185 marker sets)</option> + <option value="Lactobacillus rhamnosus">Lactobacillus rhamnosus (10 genomes, 952 marker genes, 246 marker sets)</option> + <option value="Lactobacillus ruminis">Lactobacillus ruminis (2 genomes, 989 marker genes, 143 marker sets)</option> + <option value="Lactobacillus salivarius">Lactobacillus salivarius (5 genomes, 864 marker genes, 162 marker sets)</option> + <option value="Lactococcus garvieae">Lactococcus garvieae (4 genomes, 927 marker genes, 157 marker sets)</option> + <option value="Lactococcus lactis">Lactococcus lactis (10 genomes, 856 marker genes, 190 marker sets)</option> + <option value="Laribacter hongkongensis">Laribacter hongkongensis (2 genomes, 1579 marker genes, 150 marker sets)</option> + <option value="Legionella longbeachae">Legionella longbeachae (2 genomes, 1434 marker genes, 256 marker sets)</option> + <option value="Legionella pneumophila">Legionella pneumophila (8 genomes, 1140 marker genes, 213 marker sets)</option> + <option value="Legionella sainthelensi">Legionella sainthelensi (2 genomes, 1272 marker genes, 299 marker sets)</option> + <option value="Leptospira meyeri">Leptospira meyeri (2 genomes, 1272 marker genes, 278 marker sets)</option> + <option value="Leptotrichia goodfellowii">Leptotrichia goodfellowii (2 genomes, 1086 marker genes, 182 marker sets)</option> + <option value="Leuconostoc citreum">Leuconostoc citreum (4 genomes, 908 marker genes, 102 marker sets)</option> + <option value="Leuconostoc gelidum">Leuconostoc gelidum (2 genomes, 985 marker genes, 105 marker sets)</option> + <option value="Leuconostoc kimchii">Leuconostoc kimchii (2 genomes, 990 marker genes, 97 marker sets)</option> + <option value="Leuconostoc mesenteroides">Leuconostoc mesenteroides (3 genomes, 870 marker genes, 110 marker sets)</option> + <option value="Listeria monocytogenes">Listeria monocytogenes (20 genomes, 1262 marker genes, 179 marker sets)</option> + <option value="Loktanella vestfoldensis">Loktanella vestfoldensis (2 genomes, 1360 marker genes, 189 marker sets)</option> + <option value="Lysinibacillus fusiformis">Lysinibacillus fusiformis (2 genomes, 1610 marker genes, 299 marker sets)</option> + <option value="Mannheimia haemolytica">Mannheimia haemolytica (3 genomes, 1446 marker genes, 156 marker sets)</option> + <option value="Mariprofundus ferrooxydans">Mariprofundus ferrooxydans (2 genomes, 1329 marker genes, 184 marker sets)</option> + <option value="Megasphaera elsdenii">Megasphaera elsdenii (2 genomes, 1168 marker genes, 145 marker sets)</option> + <option value="Megasphaera genomosp.">Megasphaera genomosp. (2 genomes, 973 marker genes, 196 marker sets)</option> + <option value="Mesorhizobium ciceri">Mesorhizobium ciceri (3 genomes, 1605 marker genes, 386 marker sets)</option> + <option value="Mesorhizobium loti">Mesorhizobium loti (6 genomes, 1317 marker genes, 375 marker sets)</option> + <option value="Methanobrevibacter smithii">Methanobrevibacter smithii (3 genomes, 932 marker genes, 82 marker sets)</option> + <option value="Methanococcus maripaludis">Methanococcus maripaludis (4 genomes, 961 marker genes, 83 marker sets)</option> + <option value="Methylobacterium extorquens">Methylobacterium extorquens (4 genomes, 1402 marker genes, 302 marker sets)</option> + <option value="Methylococcus capsulatus">Methylococcus capsulatus (2 genomes, 1613 marker genes, 188 marker sets)</option> + <option value="Methylotenera mobilis">Methylotenera mobilis (2 genomes, 1353 marker genes, 143 marker sets)</option> + <option value="Methylotenera versatilis">Methylotenera versatilis (2 genomes, 1251 marker genes, 231 marker sets)</option> + <option value="Methyloversatilis universalis">Methyloversatilis universalis (3 genomes, 1615 marker genes, 262 marker sets)</option> + <option value="Mobiluncus curtisii">Mobiluncus curtisii (4 genomes, 1009 marker genes, 115 marker sets)</option> + <option value="Mobiluncus mulieris">Mobiluncus mulieris (4 genomes, 980 marker genes, 165 marker sets)</option> + <option value="Moraxella catarrhalis">Moraxella catarrhalis (8 genomes, 1131 marker genes, 113 marker sets)</option> + <option value="Mycobacterium abscessus">Mycobacterium abscessus (20 genomes, 1230 marker genes, 333 marker sets)</option> + <option value="Mycobacterium avium">Mycobacterium avium (3 genomes, 1306 marker genes, 324 marker sets)</option> + <option value="Mycobacterium bovis">Mycobacterium bovis (4 genomes, 1386 marker genes, 231 marker sets)</option> + <option value="Mycobacterium canettii">Mycobacterium canettii (4 genomes, 1378 marker genes, 260 marker sets)</option> + <option value="Mycobacterium gilvum">Mycobacterium gilvum (2 genomes, 1474 marker genes, 320 marker sets)</option> + <option value="Mycobacterium intracellulare">Mycobacterium intracellulare (3 genomes, 1375 marker genes, 278 marker sets)</option> + <option value="Mycobacterium leprae">Mycobacterium leprae (2 genomes, 1053 marker genes, 195 marker sets)</option> + <option value="Mycobacterium marinum">Mycobacterium marinum (2 genomes, 1415 marker genes, 358 marker sets)</option> + <option value="Mycobacterium massiliense">Mycobacterium massiliense (11 genomes, 1291 marker genes, 291 marker sets)</option> + <option value="Mycobacterium rhodesiae">Mycobacterium rhodesiae (2 genomes, 1202 marker genes, 411 marker sets)</option> + <option value="Mycobacterium smegmatis">Mycobacterium smegmatis (2 genomes, 1151 marker genes, 407 marker sets)</option> + <option value="Mycobacterium tuberculosis">Mycobacterium tuberculosis (20 genomes, 1077 marker genes, 383 marker sets)</option> + <option value="Mycoplasma agalactiae">Mycoplasma agalactiae (2 genomes, 457 marker genes, 44 marker sets)</option> + <option value="Mycoplasma arginini">Mycoplasma arginini (2 genomes, 361 marker genes, 170 marker sets)</option> + <option value="Mycoplasma bovis">Mycoplasma bovis (3 genomes, 447 marker genes, 52 marker sets)</option> + <option value="Mycoplasma canis">Mycoplasma canis (5 genomes, 460 marker genes, 37 marker sets)</option> + <option value="Mycoplasma fermentans">Mycoplasma fermentans (2 genomes, 506 marker genes, 49 marker sets)</option> + <option value="Mycoplasma gallisepticum">Mycoplasma gallisepticum (12 genomes, 451 marker genes, 45 marker sets)</option> + <option value="Mycoplasma genitalium">Mycoplasma genitalium (2 genomes, 435 marker genes, 21 marker sets)</option> + <option value="Mycoplasma hominis">Mycoplasma hominis (2 genomes, 411 marker genes, 42 marker sets)</option> + <option value="Mycoplasma hyopneumoniae">Mycoplasma hyopneumoniae (3 genomes, 417 marker genes, 47 marker sets)</option> + <option value="Mycoplasma hyorhinis">Mycoplasma hyorhinis (5 genomes, 427 marker genes, 49 marker sets)</option> + <option value="Mycoplasma leachii">Mycoplasma leachii (2 genomes, 551 marker genes, 49 marker sets)</option> + <option value="Mycoplasma mycoides">Mycoplasma mycoides (4 genomes, 476 marker genes, 64 marker sets)</option> + <option value="Mycoplasma pneumoniae">Mycoplasma pneumoniae (3 genomes, 448 marker genes, 33 marker sets)</option> + <option value="Mycoplasma synoviae">Mycoplasma synoviae (2 genomes, 457 marker genes, 39 marker sets)</option> + <option value="Myroides odoratimimus">Myroides odoratimimus (6 genomes, 1001 marker genes, 318 marker sets)</option> + <option value="Natronobacterium gregoryi">Natronobacterium gregoryi (2 genomes, 1012 marker genes, 271 marker sets)</option> + <option value="Natronorubrum tibetense">Natronorubrum tibetense (2 genomes, 1039 marker genes, 332 marker sets)</option> + <option value="Neisseria flavescens">Neisseria flavescens (2 genomes, 1305 marker genes, 164 marker sets)</option> + <option value="Neisseria gonorrhoeae">Neisseria gonorrhoeae (14 genomes, 1201 marker genes, 205 marker sets)</option> + <option value="Neisseria meningitidis">Neisseria meningitidis (20 genomes, 997 marker genes, 216 marker sets)</option> + <option value="Novosphingobium nitrogenifigens">Novosphingobium nitrogenifigens (2 genomes, 1642 marker genes, 232 marker sets)</option> + <option value="Oceanicaulis alexandrii">Oceanicaulis alexandrii (2 genomes, 1398 marker genes, 175 marker sets)</option> + <option value="Ochrobactrum intermedium">Ochrobactrum intermedium (2 genomes, 1521 marker genes, 251 marker sets)</option> + <option value="Oenococcus oeni">Oenococcus oeni (12 genomes, 770 marker genes, 112 marker sets)</option> + <option value="Oligotropha carboxidovorans">Oligotropha carboxidovorans (2 genomes, 1592 marker genes, 192 marker sets)</option> + <option value="Orientia tsutsugamushi">Orientia tsutsugamushi (2 genomes, 651 marker genes, 94 marker sets)</option> + <option value="Ornithobacterium rhinotracheale">Ornithobacterium rhinotracheale (2 genomes, 1172 marker genes, 138 marker sets)</option> + <option value="Oxalobacter formigenes">Oxalobacter formigenes (2 genomes, 1179 marker genes, 133 marker sets)</option> + <option value="Paenibacillus alvei">Paenibacillus alvei (3 genomes, 1429 marker genes, 356 marker sets)</option> + <option value="Paenibacillus mucilaginosus">Paenibacillus mucilaginosus (2 genomes, 1584 marker genes, 433 marker sets)</option> + <option value="Pantoea ananatis">Pantoea ananatis (4 genomes, 1893 marker genes, 263 marker sets)</option> + <option value="Parabacteroides merdae">Parabacteroides merdae (3 genomes, 1201 marker genes, 260 marker sets)</option> + <option value="Parachlamydia acanthamoebae">Parachlamydia acanthamoebae (2 genomes, 1064 marker genes, 203 marker sets)</option> + <option value="Parascardovia denticolens">Parascardovia denticolens (2 genomes, 908 marker genes, 87 marker sets)</option> + <option value="Pasteurella multocida">Pasteurella multocida (5 genomes, 1400 marker genes, 149 marker sets)</option> + <option value="Pectobacterium carotovorum">Pectobacterium carotovorum (2 genomes, 1949 marker genes, 285 marker sets)</option> + <option value="Pediococcus acidilactici">Pediococcus acidilactici (4 genomes, 836 marker genes, 109 marker sets)</option> + <option value="Pediococcus pentosaceus">Pediococcus pentosaceus (2 genomes, 936 marker genes, 98 marker sets)</option> + <option value="Pelosinus fermentans">Pelosinus fermentans (2 genomes, 1545 marker genes, 299 marker sets)</option> + <option value="Peptoniphilus lacrimalis">Peptoniphilus lacrimalis (2 genomes, 937 marker genes, 98 marker sets)</option> + <option value="Peptostreptococcus anaerobius">Peptostreptococcus anaerobius (2 genomes, 1024 marker genes, 136 marker sets)</option> + <option value="Persephonella lauensis">Persephonella lauensis (2 genomes, 1194 marker genes, 108 marker sets)</option> + <option value="Phaeobacter gallaeciensis">Phaeobacter gallaeciensis (4 genomes, 1371 marker genes, 329 marker sets)</option> + <option value="Photobacterium profundum">Photobacterium profundum (2 genomes, 1714 marker genes, 406 marker sets)</option> + <option value="Polynucleobacter necessarius">Polynucleobacter necessarius (3 genomes, 968 marker genes, 106 marker sets)</option> + <option value="Porphyromonas asaccharolytica">Porphyromonas asaccharolytica (2 genomes, 1014 marker genes, 131 marker sets)</option> + <option value="Porphyromonas gingivalis">Porphyromonas gingivalis (8 genomes, 974 marker genes, 194 marker sets)</option> + <option value="Prevotella amnii">Prevotella amnii (2 genomes, 985 marker genes, 155 marker sets)</option> + <option value="Prevotella bivia">Prevotella bivia (2 genomes, 1077 marker genes, 150 marker sets)</option> + <option value="Prevotella brevis">Prevotella brevis (2 genomes, 1125 marker genes, 185 marker sets)</option> + <option value="Prevotella buccae">Prevotella buccae (2 genomes, 1106 marker genes, 220 marker sets)</option> + <option value="Prevotella dentalis">Prevotella dentalis (2 genomes, 1171 marker genes, 188 marker sets)</option> + <option value="Prevotella denticola">Prevotella denticola (3 genomes, 1015 marker genes, 186 marker sets)</option> + <option value="Prevotella intermedia">Prevotella intermedia (2 genomes, 1108 marker genes, 149 marker sets)</option> + <option value="Prevotella maculosa">Prevotella maculosa (2 genomes, 1057 marker genes, 211 marker sets)</option> + <option value="Prevotella melaninogenica">Prevotella melaninogenica (2 genomes, 1039 marker genes, 225 marker sets)</option> + <option value="Prevotella micans">Prevotella micans (2 genomes, 1048 marker genes, 165 marker sets)</option> + <option value="Prevotella oralis">Prevotella oralis (2 genomes, 1159 marker genes, 165 marker sets)</option> + <option value="Prevotella oris">Prevotella oris (3 genomes, 1006 marker genes, 202 marker sets)</option> + <option value="Prevotella ruminicola">Prevotella ruminicola (2 genomes, 1088 marker genes, 224 marker sets)</option> + <option value="Prevotella timonensis">Prevotella timonensis (2 genomes, 983 marker genes, 206 marker sets)</option> + <option value="Prevotella veroralis">Prevotella veroralis (2 genomes, 986 marker genes, 200 marker sets)</option> + <option value="Prochlorococcus marinus">Prochlorococcus marinus (13 genomes, 862 marker genes, 183 marker sets)</option> + <option value="Propionibacterium acidifaciens">Propionibacterium acidifaciens (2 genomes, 539 marker genes, 376 marker sets)</option> + <option value="Propionibacterium acidipropionici">Propionibacterium acidipropionici (2 genomes, 1277 marker genes, 233 marker sets)</option> + <option value="Propionibacterium acnes">Propionibacterium acnes (20 genomes, 1053 marker genes, 218 marker sets)</option> + <option value="Propionibacterium avidum">Propionibacterium avidum (2 genomes, 1195 marker genes, 150 marker sets)</option> + <option value="Propionimicrobium lymphophilum">Propionimicrobium lymphophilum (2 genomes, 1112 marker genes, 105 marker sets)</option> + <option value="Proteus mirabilis">Proteus mirabilis (2 genomes, 1888 marker genes, 231 marker sets)</option> + <option value="Providencia alcalifaciens">Providencia alcalifaciens (2 genomes, 1875 marker genes, 218 marker sets)</option> + <option value="Providencia stuartii">Providencia stuartii (2 genomes, 1918 marker genes, 220 marker sets)</option> + <option value="Pseudoalteromonas haloplanktis">Pseudoalteromonas haloplanktis (2 genomes, 1596 marker genes, 348 marker sets)</option> + <option value="Pseudoalteromonas luteoviolacea">Pseudoalteromonas luteoviolacea (2 genomes, 1493 marker genes, 389 marker sets)</option> + <option value="Pseudoalteromonas piscicida">Pseudoalteromonas piscicida (2 genomes, 1903 marker genes, 366 marker sets)</option> + <option value="Pseudobutyrivibrio ruminis">Pseudobutyrivibrio ruminis (3 genomes, 937 marker genes, 238 marker sets)</option> + <option value="Pseudomonas aeruginosa">Pseudomonas aeruginosa (19 genomes, 1617 marker genes, 469 marker sets)</option> + <option value="Pseudomonas brassicacearum">Pseudomonas brassicacearum (2 genomes, 1982 marker genes, 393 marker sets)</option> + <option value="Pseudomonas chlororaphis">Pseudomonas chlororaphis (2 genomes, 1904 marker genes, 402 marker sets)</option> + <option value="Pseudomonas fluorescens">Pseudomonas fluorescens (9 genomes, 1154 marker genes, 347 marker sets)</option> + <option value="Pseudomonas fulva">Pseudomonas fulva (2 genomes, 1488 marker genes, 484 marker sets)</option> + <option value="Pseudomonas mendocina">Pseudomonas mendocina (3 genomes, 1635 marker genes, 338 marker sets)</option> + <option value="Pseudomonas monteilii">Pseudomonas monteilii (3 genomes, 1761 marker genes, 372 marker sets)</option> + <option value="Pseudomonas putida">Pseudomonas putida (13 genomes, 1246 marker genes, 410 marker sets)</option> + <option value="Pseudomonas stutzeri">Pseudomonas stutzeri (13 genomes, 1189 marker genes, 403 marker sets)</option> + <option value="Pseudomonas syringae">Pseudomonas syringae (20 genomes, 1439 marker genes, 395 marker sets)</option> + <option value="Pseudomonas thermotolerans">Pseudomonas thermotolerans (2 genomes, 1731 marker genes, 219 marker sets)</option> + <option value="Pseudomonas umsongensis">Pseudomonas umsongensis (2 genomes, 1945 marker genes, 378 marker sets)</option> + <option value="Pseudomonas viridiflava">Pseudomonas viridiflava (3 genomes, 1876 marker genes, 420 marker sets)</option> + <option value="Pseudoxanthomonas suwonensis">Pseudoxanthomonas suwonensis (3 genomes, 1424 marker genes, 280 marker sets)</option> + <option value="Pyrococcus furiosus">Pyrococcus furiosus (2 genomes, 981 marker genes, 99 marker sets)</option> + <option value="Ralstonia pickettii">Ralstonia pickettii (2 genomes, 1715 marker genes, 287 marker sets)</option> + <option value="Ralstonia solanacearum">Ralstonia solanacearum (4 genomes, 1543 marker genes, 320 marker sets)</option> + <option value="Rhizobium etli">Rhizobium etli (2 genomes, 1571 marker genes, 331 marker sets)</option> + <option value="Rhizobium leguminosarum">Rhizobium leguminosarum (20 genomes, 1104 marker genes, 354 marker sets)</option> + <option value="Rhodobacter sphaeroides">Rhodobacter sphaeroides (5 genomes, 1409 marker genes, 281 marker sets)</option> + <option value="Rhodococcus equi">Rhodococcus equi (2 genomes, 1456 marker genes, 325 marker sets)</option> + <option value="Rhodococcus erythropolis">Rhodococcus erythropolis (2 genomes, 1456 marker genes, 402 marker sets)</option> + <option value="Rhodococcus pyridinivorans">Rhodococcus pyridinivorans (2 genomes, 1329 marker genes, 319 marker sets)</option> + <option value="Rhodonellum psychrophilum">Rhodonellum psychrophilum (2 genomes, 1473 marker genes, 372 marker sets)</option> + <option value="Rhodopseudomonas palustris">Rhodopseudomonas palustris (7 genomes, 1180 marker genes, 388 marker sets)</option> + <option value="Rhodospirillum rubrum">Rhodospirillum rubrum (2 genomes, 1731 marker genes, 250 marker sets)</option> + <option value="Rhodothermus marinus">Rhodothermus marinus (3 genomes, 1379 marker genes, 216 marker sets)</option> + <option value="Rickettsia canadensis">Rickettsia canadensis (2 genomes, 783 marker genes, 35 marker sets)</option> + <option value="Rickettsia massiliae">Rickettsia massiliae (2 genomes, 794 marker genes, 67 marker sets)</option> + <option value="Rickettsia prowazekii">Rickettsia prowazekii (5 genomes, 753 marker genes, 44 marker sets)</option> + <option value="Rickettsia rickettsii">Rickettsia rickettsii (14 genomes, 737 marker genes, 72 marker sets)</option> + <option value="Rickettsia slovaca">Rickettsia slovaca (2 genomes, 807 marker genes, 50 marker sets)</option> + <option value="Rickettsia typhi">Rickettsia typhi (3 genomes, 786 marker genes, 24 marker sets)</option> + <option value="Riemerella anatipestifer">Riemerella anatipestifer (5 genomes, 999 marker genes, 139 marker sets)</option> + <option value="Rothia dentocariosa">Rothia dentocariosa (2 genomes, 1057 marker genes, 145 marker sets)</option> + <option value="Rothia mucilaginosa">Rothia mucilaginosa (3 genomes, 990 marker genes, 143 marker sets)</option> + <option value="Rubrivivax benzoatilyticus">Rubrivivax benzoatilyticus (2 genomes, 1846 marker genes, 310 marker sets)</option> + <option value="Ruminococcus albus">Ruminococcus albus (2 genomes, 1187 marker genes, 284 marker sets)</option> + <option value="Ruminococcus flavefaciens">Ruminococcus flavefaciens (5 genomes, 783 marker genes, 287 marker sets)</option> + <option value="Ruminococcus gnavus">Ruminococcus gnavus (2 genomes, 1114 marker genes, 199 marker sets)</option> + <option value="Saccharomonospora azurea">Saccharomonospora azurea (2 genomes, 1323 marker genes, 314 marker sets)</option> + <option value="Salinispora arenicola">Salinispora arenicola (20 genomes, 1171 marker genes, 326 marker sets)</option> + <option value="Salinispora pacifica">Salinispora pacifica (20 genomes, 1005 marker genes, 278 marker sets)</option> + <option value="Salinispora tropica">Salinispora tropica (5 genomes, 1307 marker genes, 311 marker sets)</option> + <option value="Salmonella enterica">Salmonella enterica (20 genomes, 1643 marker genes, 283 marker sets)</option> + <option value="Saprospira grandis">Saprospira grandis (2 genomes, 1147 marker genes, 326 marker sets)</option> + <option value="Selenomonas artemidis">Selenomonas artemidis (2 genomes, 1227 marker genes, 134 marker sets)</option> + <option value="Selenomonas bovis">Selenomonas bovis (2 genomes, 1210 marker genes, 191 marker sets)</option> + <option value="Selenomonas ruminantium">Selenomonas ruminantium (4 genomes, 1010 marker genes, 375 marker sets)</option> + <option value="Selenomonas sputigena">Selenomonas sputigena (2 genomes, 1404 marker genes, 138 marker sets)</option> + <option value="Serratia marcescens">Serratia marcescens (2 genomes, 1727 marker genes, 324 marker sets)</option> + <option value="Serratia plymuthica">Serratia plymuthica (5 genomes, 1990 marker genes, 304 marker sets)</option> + <option value="Serratia proteamaculans">Serratia proteamaculans (2 genomes, 2115 marker genes, 304 marker sets)</option> + <option value="Shewanella baltica">Shewanella baltica (8 genomes, 1677 marker genes, 338 marker sets)</option> + <option value="Shigella boydii">Shigella boydii (6 genomes, 1605 marker genes, 348 marker sets)</option> + <option value="Shigella dysenteriae">Shigella dysenteriae (4 genomes, 1643 marker genes, 335 marker sets)</option> + <option value="Shigella flexneri">Shigella flexneri (18 genomes, 1512 marker genes, 333 marker sets)</option> + <option value="Shigella sonnei">Shigella sonnei (5 genomes, 1936 marker genes, 302 marker sets)</option> + <option value="Solobacterium moorei">Solobacterium moorei (2 genomes, 877 marker genes, 170 marker sets)</option> + <option value="Sphingomonas melonis">Sphingomonas melonis (3 genomes, 1562 marker genes, 203 marker sets)</option> + <option value="Sphingomonas phyllosphaerae">Sphingomonas phyllosphaerae (2 genomes, 1437 marker genes, 248 marker sets)</option> + <option value="Spirochaeta thermophila">Spirochaeta thermophila (2 genomes, 1122 marker genes, 152 marker sets)</option> + <option value="Staphylococcus aureus">Staphylococcus aureus (20 genomes, 1169 marker genes, 170 marker sets)</option> + <option value="Staphylococcus epidermidis">Staphylococcus epidermidis (20 genomes, 933 marker genes, 208 marker sets)</option> + <option value="Staphylococcus hominis">Staphylococcus hominis (2 genomes, 1209 marker genes, 107 marker sets)</option> + <option value="Staphylococcus lugdunensis">Staphylococcus lugdunensis (3 genomes, 1270 marker genes, 131 marker sets)</option> + <option value="Staphylococcus pseudintermedius">Staphylococcus pseudintermedius (2 genomes, 1324 marker genes, 134 marker sets)</option> + <option value="Stenotrophomonas maltophilia">Stenotrophomonas maltophilia (8 genomes, 1441 marker genes, 396 marker sets)</option> + <option value="Streptococcus agalactiae">Streptococcus agalactiae (20 genomes, 807 marker genes, 204 marker sets)</option> + <option value="Streptococcus anginosus">Streptococcus anginosus (5 genomes, 990 marker genes, 160 marker sets)</option> + <option value="Streptococcus australis">Streptococcus australis (2 genomes, 1197 marker genes, 124 marker sets)</option> + <option value="Streptococcus bovis">Streptococcus bovis (5 genomes, 976 marker genes, 140 marker sets)</option> + <option value="Streptococcus dysgalactiae">Streptococcus dysgalactiae (5 genomes, 982 marker genes, 204 marker sets)</option> + <option value="Streptococcus equi">Streptococcus equi (4 genomes, 961 marker genes, 136 marker sets)</option> + <option value="Streptococcus gallolyticus">Streptococcus gallolyticus (3 genomes, 1151 marker genes, 131 marker sets)</option> + <option value="Streptococcus infantarius">Streptococcus infantarius (2 genomes, 1097 marker genes, 118 marker sets)</option> + <option value="Streptococcus infantis">Streptococcus infantis (4 genomes, 971 marker genes, 131 marker sets)</option> + <option value="Streptococcus intermedius">Streptococcus intermedius (3 genomes, 1049 marker genes, 115 marker sets)</option> + <option value="Streptococcus mitis">Streptococcus mitis (11 genomes, 743 marker genes, 256 marker sets)</option> + <option value="Streptococcus mutans">Streptococcus mutans (8 genomes, 1053 marker genes, 121 marker sets)</option> + <option value="Streptococcus oralis">Streptococcus oralis (9 genomes, 871 marker genes, 196 marker sets)</option> + <option value="Streptococcus parasanguinis">Streptococcus parasanguinis (6 genomes, 999 marker genes, 203 marker sets)</option> + <option value="Streptococcus parauberis">Streptococcus parauberis (3 genomes, 969 marker genes, 126 marker sets)</option> + <option value="Streptococcus pneumoniae">Streptococcus pneumoniae (20 genomes, 845 marker genes, 160 marker sets)</option> + <option value="Streptococcus pseudopneumoniae">Streptococcus pseudopneumoniae (3 genomes, 1102 marker genes, 236 marker sets)</option> + <option value="Streptococcus pseudoporcinus">Streptococcus pseudoporcinus (2 genomes, 1166 marker genes, 114 marker sets)</option> + <option value="Streptococcus pyogenes">Streptococcus pyogenes (20 genomes, 885 marker genes, 150 marker sets)</option> + <option value="Streptococcus salivarius">Streptococcus salivarius (4 genomes, 1021 marker genes, 130 marker sets)</option> + <option value="Streptococcus sanguinis">Streptococcus sanguinis (13 genomes, 877 marker genes, 335 marker sets)</option> + <option value="Streptococcus suis">Streptococcus suis (14 genomes, 852 marker genes, 161 marker sets)</option> + <option value="Streptococcus thermophilus">Streptococcus thermophilus (6 genomes, 971 marker genes, 96 marker sets)</option> + <option value="Streptococcus urinalis">Streptococcus urinalis (2 genomes, 1107 marker genes, 100 marker sets)</option> + <option value="Streptomyces cattleya">Streptomyces cattleya (3 genomes, 1460 marker genes, 495 marker sets)</option> + <option value="Sulfobacillus acidophilus">Sulfobacillus acidophilus (2 genomes, 1273 marker genes, 192 marker sets)</option> + <option value="Sulfolobus acidocaldarius">Sulfolobus acidocaldarius (3 genomes, 819 marker genes, 115 marker sets)</option> + <option value="Sulfolobus islandicus">Sulfolobus islandicus (9 genomes, 778 marker genes, 149 marker sets)</option> + <option value="Sulfolobus solfataricus">Sulfolobus solfataricus (2 genomes, 822 marker genes, 116 marker sets)</option> + <option value="Sutterella wadsworthensis">Sutterella wadsworthensis (3 genomes, 935 marker genes, 232 marker sets)</option> + <option value="Synechococcus elongatus">Synechococcus elongatus (2 genomes, 1468 marker genes, 121 marker sets)</option> + <option value="Taylorella asinigenitalis">Taylorella asinigenitalis (2 genomes, 1125 marker genes, 58 marker sets)</option> + <option value="Taylorella equigenitalis">Taylorella equigenitalis (2 genomes, 1154 marker genes, 53 marker sets)</option> + <option value="Teredinibacter turnerae">Teredinibacter turnerae (8 genomes, 1640 marker genes, 312 marker sets)</option> + <option value="Thauera linaloolentis">Thauera linaloolentis (2 genomes, 1773 marker genes, 294 marker sets)</option> + <option value="Thermacetogenium phaeum">Thermacetogenium phaeum (2 genomes, 1344 marker genes, 157 marker sets)</option> + <option value="Thermoanaerobacterium thermosaccharolyticum">Thermoanaerobacterium thermosaccharolyticum (2 genomes, 1317 marker genes, 136 marker sets)</option> + <option value="Thermobifida fusca">Thermobifida fusca (2 genomes, 1421 marker genes, 225 marker sets)</option> + <option value="Thermus oshimai">Thermus oshimai (2 genomes, 1196 marker genes, 112 marker sets)</option> + <option value="Thermus scotoductus">Thermus scotoductus (2 genomes, 1098 marker genes, 162 marker sets)</option> + <option value="Thermus thermophilus">Thermus thermophilus (4 genomes, 1100 marker genes, 123 marker sets)</option> + <option value="Thioalkalivibrio thiocyanoxidans">Thioalkalivibrio thiocyanoxidans (2 genomes, 1159 marker genes, 330 marker sets)</option> + <option value="Thiobacillus denitrificans">Thiobacillus denitrificans (2 genomes, 1290 marker genes, 203 marker sets)</option> + <option value="Treponema denticola">Treponema denticola (9 genomes, 954 marker genes, 221 marker sets)</option> + <option value="Treponema pallidum">Treponema pallidum (3 genomes, 717 marker genes, 44 marker sets)</option> + <option value="Treponema vincentii">Treponema vincentii (2 genomes, 946 marker genes, 178 marker sets)</option> + <option value="Ureaplasma parvum">Ureaplasma parvum (5 genomes, 420 marker genes, 35 marker sets)</option> + <option value="Ureaplasma urealyticum">Ureaplasma urealyticum (10 genomes, 386 marker genes, 50 marker sets)</option> + <option value="Variovorax paradoxus">Variovorax paradoxus (5 genomes, 1314 marker genes, 368 marker sets)</option> + <option value="Veillonella atypica">Veillonella atypica (3 genomes, 1145 marker genes, 136 marker sets)</option> + <option value="Veillonella parvula">Veillonella parvula (2 genomes, 1174 marker genes, 97 marker sets)</option> + <option value="Vibrio alginolyticus">Vibrio alginolyticus (5 genomes, 1283 marker genes, 392 marker sets)</option> + <option value="Vibrio cholerae">Vibrio cholerae (20 genomes, 1729 marker genes, 348 marker sets)</option> + <option value="Vibrio fischeri">Vibrio fischeri (2 genomes, 1814 marker genes, 227 marker sets)</option> + <option value="Vibrio harveyi">Vibrio harveyi (3 genomes, 1674 marker genes, 373 marker sets)</option> + <option value="Vibrio mimicus">Vibrio mimicus (2 genomes, 1752 marker genes, 276 marker sets)</option> + <option value="Vibrio parahaemolyticus">Vibrio parahaemolyticus (12 genomes, 1733 marker genes, 363 marker sets)</option> + <option value="Vibrio splendidus">Vibrio splendidus (2 genomes, 1757 marker genes, 310 marker sets)</option> + <option value="Vibrio vulnificus">Vibrio vulnificus (5 genomes, 1802 marker genes, 386 marker sets)</option> + <option value="Wigglesworthia glossinidia">Wigglesworthia glossinidia (2 genomes, 679 marker genes, 9 marker sets)</option> + <option value="Wohlfahrtiimonas chitiniclastica">Wohlfahrtiimonas chitiniclastica (2 genomes, 1335 marker genes, 78 marker sets)</option> + <option value="Wolbachia endosymbiont of Culex quinquefasciatus">Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 747 marker genes, 56 marker sets)</option> + <option value="Xanthomonas axonopodis">Xanthomonas axonopodis (5 genomes, 1627 marker genes, 365 marker sets)</option> + <option value="Xanthomonas campestris">Xanthomonas campestris (5 genomes, 1623 marker genes, 336 marker sets)</option> + <option value="Xanthomonas oryzae">Xanthomonas oryzae (3 genomes, 1627 marker genes, 339 marker sets)</option> + <option value="Xylella fastidiosa">Xylella fastidiosa (10 genomes, 1207 marker genes, 178 marker sets)</option> + <option value="Yersinia enterocolitica">Yersinia enterocolitica (5 genomes, 1868 marker genes, 316 marker sets)</option> + <option value="Yersinia pestis">Yersinia pestis (20 genomes, 1683 marker genes, 330 marker sets)</option> + <option value="Yersinia pseudotuberculosis">Yersinia pseudotuberculosis (4 genomes, 1975 marker genes, 263 marker sets)</option> + <option value="Zymomonas mobilis">Zymomonas mobilis (3 genomes, 1142 marker genes, 133 marker sets)</option> </param> </when> </conditional>
--- a/test-data/life.loc Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Prokaryote Prokaryote (5656 genomes, 56 marker genes, 24 marker sets)
--- a/tool-data/class.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,57 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acidobacteriia Acidobacteriia (10 genomes, 572 marker genes, 395 marker sets) -Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) -Actinobacteria Actinobacteria (729 genomes, 205 marker genes, 119 marker sets) -Alphaproteobacteria Alphaproteobacteria (648 genomes, 225 marker genes, 148 marker sets) -Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets) -Archaeoglobi Archaeoglobi (5 genomes, 619 marker genes, 392 marker sets) -Bacilli Bacilli (821 genomes, 250 marker genes, 136 marker sets) -Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets) -Bacteroidia Bacteroidia (211 genomes, 401 marker genes, 266 marker sets) -Betaproteobacteria Betaproteobacteria (322 genomes, 387 marker genes, 234 marker sets) -Chlamydiia Chlamydiia (64 genomes, 455 marker genes, 185 marker sets) -Chlorobia Chlorobia (12 genomes, 612 marker genes, 333 marker sets) -Chloroflexi Chloroflexi (9 genomes, 452 marker genes, 315 marker sets) -Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets) -Clostridia Clostridia (446 genomes, 196 marker genes, 110 marker sets) -Cytophagia Cytophagia (48 genomes, 438 marker genes, 328 marker sets) -Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets) -Dehalococcoidetes Dehalococcoidetes (5 genomes, 755 marker genes, 54 marker sets) -Deinococci Deinococci (40 genomes, 528 marker genes, 359 marker sets) -Deltaproteobacteria Deltaproteobacteria (93 genomes, 197 marker genes, 125 marker sets) -Dictyoglomia Dictyoglomia (2 genomes, 1060 marker genes, 103 marker sets) -Epsilonproteobacteria Epsilonproteobacteria (111 genomes, 445 marker genes, 271 marker sets) -Erysipelotrichi Erysipelotrichi (18 genomes, 301 marker genes, 159 marker sets) -Flavobacteriia Flavobacteriia (126 genomes, 321 marker genes, 202 marker sets) -Fusobacteriia Fusobacteriia (32 genomes, 289 marker genes, 159 marker sets) -Gammaproteobacteria Gammaproteobacteria (1167 genomes, 280 marker genes, 178 marker sets) -Halobacteria Halobacteria (59 genomes, 367 marker genes, 241 marker sets) -Holophagae Holophagae (2 genomes, 883 marker genes, 459 marker sets) -Ignavibacteria Ignavibacteria (2 genomes, 1003 marker genes, 383 marker sets) -Methanobacteria Methanobacteria (12 genomes, 513 marker genes, 264 marker sets) -Methanococci Methanococci (16 genomes, 610 marker genes, 439 marker sets) -Methanomicrobia Methanomicrobia (29 genomes, 248 marker genes, 165 marker sets) -Mollicutes Mollicutes (119 genomes, 177 marker genes, 105 marker sets) -Negativicutes Negativicutes (64 genomes, 334 marker genes, 167 marker sets) -Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets) -Nitrospira Nitrospira (4 genomes, 676 marker genes, 379 marker sets) -Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets) -Opitutae Opitutae (4 genomes, 676 marker genes, 427 marker sets) -Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets) -Planctomycetia Planctomycetia (11 genomes, 360 marker genes, 256 marker sets) -Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets) -Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets) -Solirubrobacterales Solirubrobacterales (2 genomes, 995 marker genes, 398 marker sets) -Sphingobacteriia Sphingobacteriia (27 genomes, 334 marker genes, 233 marker sets) -Spirochaetia Spirochaetia (71 genomes, 218 marker genes, 127 marker sets) -Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets) -Synergistia Synergistia (13 genomes, 452 marker genes, 160 marker sets) -Thermococci Thermococci (16 genomes, 500 marker genes, 315 marker sets) -Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets) -Thermomicrobia Thermomicrobia (2 genomes, 933 marker genes, 336 marker sets) -Thermoplasmata Thermoplasmata (4 genomes, 563 marker genes, 310 marker sets) -Thermoprotei Thermoprotei (54 genomes, 217 marker genes, 168 marker sets) -Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets) -Verrucomicrobiae Verrucomicrobiae (7 genomes, 403 marker genes, 284 marker sets) -Zetaproteobacteria Zetaproteobacteria (2 genomes, 1329 marker genes, 184 marker sets)
--- a/tool-data/domain.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Archaea Archaea (207 genomes, 149 marker genes, 107 marker sets) -Bacteria Bacteria (5449 genomes, 104 marker genes, 58 marker sets)
--- a/tool-data/family.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,233 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acetobacteraceae Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets) -Acholeplasmataceae Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets) -Acidaminococcaceae Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets) -Acidilobaceae Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets) -Acidithiobacillaceae Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets) -Acidobacteriaceae Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets) -Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) -Actinomycetaceae Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets) -Actinopolysporaceae Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets) -Aerococcaceae Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets) -Aeromonadaceae Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets) -Alcaligenaceae Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets) -Alcanivoracaceae Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets) -Alicyclobacillaceae Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets) -Alteromonadaceae Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets) -Anaplasmataceae Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets) -Aquificaceae Aquificaceae (10 genomes, 656 marker genes, 475 marker sets) -Archaeoglobaceae Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets) -Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) -Aurantimonadaceae Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets) -Bacillaceae Bacillaceae (162 genomes, 418 marker genes, 155 marker sets) -Bacteroidaceae Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets) -Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) -Bartonellaceae Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets) -Bdellovibrionaceae Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets) -Beijerinckiaceae Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets) -Bifidobacteriaceae Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets) -Blattabacteriaceae Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets) -Brachyspiraceae Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets) -Bradyrhizobiaceae Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets) -Brevibacteriaceae Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets) -Brucellaceae Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets) -Burkholderiaceae Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets) -Campylobacteraceae Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets) -Cardiobacteriaceae Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets) -Carnobacteriaceae Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets) -Caulobacteraceae Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets) -Cellulomonadaceae Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets) -Chitinophagaceae Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets) -Chlamydiaceae Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets) -Chlorobiaceae Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets) -Chloroflexaceae Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets) -Chromatiaceae Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets) -Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) -Clostridiaceae Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets) -Clostridiales Family XI. Incertae Sedis Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets) -Clostridiales Family XVII. Incertae Sedis Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets) -Colwelliaceae Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets) -Comamonadaceae Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets) -Conexibacteraceae Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets) -Coriobacteriaceae Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets) -Corynebacteriaceae Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets) -Coxiellaceae Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets) -Cryomorphaceae Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets) -Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) -Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) -Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) -Cyclobacteriaceae Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets) -Cytophagaceae Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets) -Deferribacteraceae Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets) -Dehalococcoidaceae Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets) -Deinococcaceae Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets) -Dermabacteraceae Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets) -Dermacoccaceae Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets) -Dermatophilaceae Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets) -Desulfobacteraceae Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets) -Desulfobulbaceae Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets) -Desulfohalobiaceae Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets) -Desulfomicrobiaceae Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets) -Desulfovibrionaceae Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets) -Desulfurellaceae Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets) -Desulfurobacteriaceae Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets) -Desulfurococcaceae Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets) -Dictyoglomaceae Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets) -Ectothiorhodospiraceae Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets) -Enterobacteriaceae Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets) -Enterococcaceae Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets) -Entomoplasmataceae Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets) -Erysipelotrichaceae Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets) -Erythrobacteraceae Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets) -Eubacteriaceae Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets) -Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) -Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) -Ferrimonadaceae Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets) -Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) -Flammeovirgaceae Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets) -Flavobacteriaceae Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets) -Francisellaceae Francisellaceae (40 genomes, 787 marker genes, 238 marker sets) -Frankiaceae Frankiaceae (12 genomes, 569 marker genes, 282 marker sets) -Fusobacteriaceae Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets) -Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) -Geobacteraceae Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets) -Geodermatophilaceae Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets) -Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) -Glycomycetaceae Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets) -Gordoniaceae Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets) -Hahellaceae Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets) -Halanaerobiaceae Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets) -Halobacteriaceae Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets) -Halobacteroidaceae Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets) -Halomonadaceae Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets) -Helicobacteraceae Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets) -Holophagaceae Holophagaceae (2 genomes, 883 marker genes, 459 marker sets) -Hydrogenophilaceae Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets) -Hydrogenothermaceae Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets) -Hyphomicrobiaceae Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets) -Hyphomonadaceae Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets) -Idiomarinaceae Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets) -Intrasporangiaceae Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets) -Jonesiaceae Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets) -Lachnospiraceae Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets) -Lactobacillaceae Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets) -Legionellaceae Legionellaceae (18 genomes, 695 marker genes, 290 marker sets) -Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) -Leptospiraceae Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets) -Leptotrichiaceae Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets) -Leuconostocaceae Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets) -Listeriaceae Listeriaceae (25 genomes, 873 marker genes, 158 marker sets) -Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) -Mariprofundaceae Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets) -Methanobacteriaceae Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets) -Methanocaldococcaceae Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets) -Methanocellaceae Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets) -Methanococcaceae Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets) -Methanocorpusculaceae Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets) -Methanomicrobiaceae Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets) -Methanoregulaceae Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets) -Methanosaetaceae Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets) -Methanosarcinaceae Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets) -Methylobacteriaceae Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets) -Methylococcaceae Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets) -Methylocystaceae Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets) -Methylophilaceae Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets) -Microbacteriaceae Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets) -Microchaetaceae Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets) -Micrococcaceae Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets) -Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) -Micromonosporaceae Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets) -Moraxellaceae Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets) -Mycobacteriaceae Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets) -Mycoplasmataceae Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets) -Myxococcaceae Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets) -Nakamurellaceae Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets) -Nautiliaceae Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets) -Neisseriaceae Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets) -Nitrosomonadaceae Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets) -Nitrosopumilaceae Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets) -Nitrospiraceae Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets) -Nocardiaceae Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets) -Nocardioidaceae Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets) -Nocardiopsaceae Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets) -Nostocaceae Nostocaceae (13 genomes, 800 marker genes, 536 marker sets) -Oceanospirillaceae Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets) -Opitutaceae Opitutaceae (3 genomes, 859 marker genes, 521 marker sets) -Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) -Oxalobacteraceae Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets) -Paenibacillaceae Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets) -Parachlamydiaceae Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets) -Pasteurellaceae Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets) -Patulibacteraceae Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets) -Pelagibacteraceae Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets) -Pelobacteraceae Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets) -Peptococcaceae Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets) -Peptostreptococcaceae Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets) -Phyllobacteriaceae Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets) -Piscirickettsiaceae Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets) -Planctomycetaceae Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets) -Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) -Planococcaceae Planococcaceae (6 genomes, 823 marker genes, 233 marker sets) -Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) -Porphyromonadaceae Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets) -Prevotellaceae Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets) -Prochlorococcaceae Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets) -Promicromonosporaceae Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets) -Propionibacteriaceae Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets) -Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) -Pseudoalteromonadaceae Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets) -Pseudomonadaceae Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets) -Pseudonocardiaceae Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets) -Psychromonadaceae Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets) -Pyrodictiaceae Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets) -Rhizobiaceae Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets) -Rhodobacteraceae Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets) -Rhodobiaceae Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets) -Rhodocyclaceae Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets) -Rhodospirillaceae Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets) -Rhodothermaceae Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets) -Rickettsiaceae Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets) -Rikenellaceae Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets) -Rivulariaceae Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets) -Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) -Rubrobacteraceae Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets) -Ruminococcaceae Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets) -Saprospiraceae Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets) -Shewanellaceae Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets) -Sinobacteraceae Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets) -Solirubrobacteraceae Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets) -Sphingobacteriaceae Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets) -Sphingomonadaceae Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets) -Spirochaetaceae Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets) -Sporolactobacillaceae Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets) -Staphylococcaceae Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets) -Streptococcaceae Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets) -Streptomycetaceae Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets) -Streptosporangiaceae Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets) -Succinivibrionaceae Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets) -Sulfolobaceae Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets) -Sutterellaceae Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets) -Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) -Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) -Synergistaceae Synergistaceae (13 genomes, 452 marker genes, 160 marker sets) -Syntrophomonadaceae Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets) -Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) -Thermaceae Thermaceae (23 genomes, 585 marker genes, 331 marker sets) -Thermoactinomycetaceae Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets) -Thermoanaerobacteraceae Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets) -Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets) -Thermococcaceae Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets) -Thermodesulfobacteriaceae Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets) -Thermodesulfobiaceae Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets) -Thermomonosporaceae Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets) -Thermoplasmataceae Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets) -Thermoproteaceae Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets) -Thermotogaceae Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets) -Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) -Thiotrichaceae Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets) -Veillonellaceae Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets) -Verrucomicrobiaceae Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets) -Vibrionaceae Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets) -Xanthobacteraceae Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets) -Xanthomonadaceae Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)
--- a/tool-data/genus.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,508 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acetobacter Acetobacter (11 genomes, 1037 marker genes, 392 marker sets) -Acholeplasma Acholeplasma (7 genomes, 309 marker genes, 151 marker sets) -Achromobacter Achromobacter (5 genomes, 1298 marker genes, 427 marker sets) -Acidaminococcus Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets) -Acidilobus Acidilobus (2 genomes, 645 marker genes, 144 marker sets) -Acidiphilium Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets) -Acidithiobacillus Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets) -Acidobacterium Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets) -Acidovorax Acidovorax (9 genomes, 931 marker genes, 335 marker sets) -Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) -Acinetobacter Acinetobacter (66 genomes, 883 marker genes, 281 marker sets) -Actinobacillus Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets) -Actinobaculum Actinobaculum (5 genomes, 606 marker genes, 222 marker sets) -Actinomadura Actinomadura (3 genomes, 940 marker genes, 376 marker sets) -Actinomyces Actinomyces (27 genomes, 432 marker genes, 214 marker sets) -Actinoplanes Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets) -Actinopolyspora Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets) -Aequorivita Aequorivita (2 genomes, 1087 marker genes, 283 marker sets) -Aerococcus Aerococcus (2 genomes, 719 marker genes, 247 marker sets) -Aeromonas Aeromonas (12 genomes, 1380 marker genes, 463 marker sets) -Aggregatibacter Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets) -Agrobacterium Agrobacterium (12 genomes, 994 marker genes, 379 marker sets) -Agromyces Agromyces (2 genomes, 1096 marker genes, 287 marker sets) -Ahrensia Ahrensia (2 genomes, 1213 marker genes, 422 marker sets) -Alcaligenes Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets) -Alcanivorax Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets) -Algoriphagus Algoriphagus (5 genomes, 947 marker genes, 361 marker sets) -Aliagarivorans Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets) -Alicycliphilus Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets) -Alicyclobacillus Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets) -Alishewanella Alishewanella (2 genomes, 1677 marker genes, 232 marker sets) -Alistipes Alistipes (5 genomes, 703 marker genes, 335 marker sets) -Alkaliphilus Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets) -Alloscardovia Alloscardovia (2 genomes, 950 marker genes, 116 marker sets) -Alteromonas Alteromonas (6 genomes, 1419 marker genes, 314 marker sets) -Aminobacterium Aminobacterium (2 genomes, 950 marker genes, 145 marker sets) -Amycolatopsis Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets) -Anabaena Anabaena (5 genomes, 992 marker genes, 584 marker sets) -Anaerococcus Anaerococcus (6 genomes, 665 marker genes, 181 marker sets) -Anaeromyxobacter Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets) -Anaplasma Anaplasma (2 genomes, 688 marker genes, 127 marker sets) -Anoxybacillus Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets) -Aquimarina Aquimarina (2 genomes, 1084 marker genes, 373 marker sets) -Archaeoglobus Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets) -Arcobacter Arcobacter (8 genomes, 804 marker genes, 234 marker sets) -Arenibacter Arenibacter (2 genomes, 1200 marker genes, 269 marker sets) -Arsenophonus Arsenophonus (4 genomes, 640 marker genes, 164 marker sets) -Arthrobacter Arthrobacter (25 genomes, 473 marker genes, 190 marker sets) -Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) -Asticcacaulis Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets) -Atopobium Atopobium (8 genomes, 486 marker genes, 194 marker sets) -Aurantimonas Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets) -Azoarcus Azoarcus (2 genomes, 1311 marker genes, 376 marker sets) -Azorhizobium Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets) -Azospira Azospira (2 genomes, 1578 marker genes, 218 marker sets) -Azospirillum Azospirillum (3 genomes, 1038 marker genes, 549 marker sets) -Azotobacter Azotobacter (3 genomes, 1930 marker genes, 269 marker sets) -Bacillus Bacillus (122 genomes, 491 marker genes, 170 marker sets) -Bacteroides Bacteroides (96 genomes, 524 marker genes, 282 marker sets) -Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) -Barnesiella Barnesiella (2 genomes, 1045 marker genes, 230 marker sets) -Bartonella Bartonella (29 genomes, 708 marker genes, 188 marker sets) -Bdellovibrio Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets) -Bifidobacterium Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets) -Blastococcus Blastococcus (2 genomes, 1123 marker genes, 317 marker sets) -Blattabacterium Blattabacterium (6 genomes, 547 marker genes, 16 marker sets) -Blautia Blautia (7 genomes, 649 marker genes, 291 marker sets) -Bordetella Bordetella (9 genomes, 892 marker genes, 277 marker sets) -Borrelia Borrelia (17 genomes, 474 marker genes, 66 marker sets) -Brachyspira Brachyspira (10 genomes, 783 marker genes, 458 marker sets) -Bradyrhizobium Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets) -Brevibacillus Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets) -Brevibacterium Brevibacterium (3 genomes, 833 marker genes, 259 marker sets) -Brevundimonas Brevundimonas (6 genomes, 952 marker genes, 452 marker sets) -Brucella Brucella (90 genomes, 1371 marker genes, 236 marker sets) -Buchnera Buchnera (10 genomes, 380 marker genes, 35 marker sets) -Burkholderia Burkholderia (66 genomes, 724 marker genes, 235 marker sets) -Butyricimonas Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets) -Butyrivibrio Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets) -Caldicellulosiruptor Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets) -Calothrix Calothrix (2 genomes, 1244 marker genes, 726 marker sets) -Campylobacter Campylobacter (55 genomes, 598 marker genes, 263 marker sets) -Candidatus Arthromitus Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets) -Candidatus Blochmannia Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets) -Candidatus Liberibacter Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets) -Candidatus Pelagibacter Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets) -Candidatus Pelagibacter-like Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets) -Candidatus Phytoplasma Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets) -Capnocytophaga Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets) -Carboxydothermus Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets) -Cardiobacterium Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets) -Caulobacter Caulobacter (4 genomes, 1219 marker genes, 375 marker sets) -Cellulomonas Cellulomonas (6 genomes, 805 marker genes, 257 marker sets) -Cellulophaga Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets) -Chitinilyticum Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets) -Chlamydia Chlamydia (43 genomes, 609 marker genes, 88 marker sets) -Chlamydophila Chlamydophila (16 genomes, 616 marker genes, 71 marker sets) -Chlorobaculum Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets) -Chlorobium Chlorobium (6 genomes, 820 marker genes, 277 marker sets) -Chloroflexus Chloroflexus (5 genomes, 659 marker genes, 449 marker sets) -Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) -Chryseobacterium Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets) -Citreicella Citreicella (2 genomes, 1369 marker genes, 390 marker sets) -Citrobacter Citrobacter (8 genomes, 1566 marker genes, 347 marker sets) -Citromicrobium Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets) -Clavibacter Clavibacter (2 genomes, 1152 marker genes, 228 marker sets) -Clostridium Clostridium (180 genomes, 308 marker genes, 161 marker sets) -Cohnella Cohnella (3 genomes, 1072 marker genes, 306 marker sets) -Collinsella Collinsella (2 genomes, 829 marker genes, 315 marker sets) -Colwellia Colwellia (3 genomes, 1371 marker genes, 293 marker sets) -Comamonas Comamonas (5 genomes, 1047 marker genes, 399 marker sets) -Commensalibacter Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets) -Conchiformibius Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets) -Coprobacillus Coprobacillus (3 genomes, 833 marker genes, 331 marker sets) -Coprococcus Coprococcus (3 genomes, 780 marker genes, 260 marker sets) -Coprothermobacter Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets) -Corynebacterium Corynebacterium (80 genomes, 585 marker genes, 243 marker sets) -Coxiella Coxiella (5 genomes, 1047 marker genes, 146 marker sets) -Cronobacter Cronobacter (4 genomes, 1838 marker genes, 338 marker sets) -Cupriavidus Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets) -Curtobacterium Curtobacterium (2 genomes, 952 marker genes, 330 marker sets) -Curvibacter Curvibacter (2 genomes, 1707 marker genes, 367 marker sets) -Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) -Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) -Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) -Cycloclasticus Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets) -Cytophaga Cytophaga (3 genomes, 745 marker genes, 464 marker sets) -Dechloromonas Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets) -Dehalobacter Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets) -Dehalococcoides Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets) -Deinococcus Deinococcus (16 genomes, 630 marker genes, 426 marker sets) -Delftia Delftia (3 genomes, 1683 marker genes, 409 marker sets) -Desulfatibacillum Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets) -Desulfobacterium Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets) -Desulfobulbus Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets) -Desulfomicrobium Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets) -Desulfosporosinus Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets) -Desulfotignum Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets) -Desulfotomaculum Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets) -Desulfovibrio Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets) -Desulfurococcus Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets) -Dialister Dialister (4 genomes, 695 marker genes, 210 marker sets) -Dickeya Dickeya (4 genomes, 1671 marker genes, 311 marker sets) -Dictyoglomus Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets) -Dorea Dorea (4 genomes, 835 marker genes, 261 marker sets) -Dyadobacter Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets) -Dysgonomonas Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets) -Echinicola Echinicola (2 genomes, 1196 marker genes, 350 marker sets) -Ectothiorhodospira Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets) -Edwardsiella Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets) -Eggerthella Eggerthella (4 genomes, 843 marker genes, 301 marker sets) -Ehrlichia Ehrlichia (6 genomes, 704 marker genes, 87 marker sets) -Elizabethkingia Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets) -Ensifer Ensifer (26 genomes, 1043 marker genes, 323 marker sets) -Enterobacter Enterobacter (13 genomes, 1338 marker genes, 370 marker sets) -Enterococcus Enterococcus (51 genomes, 672 marker genes, 259 marker sets) -Enterovibrio Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets) -Entomoplasma Entomoplasma (3 genomes, 460 marker genes, 109 marker sets) -Eremococcus Eremococcus (2 genomes, 922 marker genes, 109 marker sets) -Erwinia Erwinia (8 genomes, 1420 marker genes, 280 marker sets) -Erysipelothrix Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets) -Erythrobacter Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets) -Escherichia Escherichia (27 genomes, 1212 marker genes, 320 marker sets) -Eubacterium Eubacterium (18 genomes, 234 marker genes, 157 marker sets) -Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) -Facklamia Facklamia (5 genomes, 575 marker genes, 184 marker sets) -Faecalibacterium Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets) -Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) -Ferrimonas Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets) -Finegoldia Finegoldia (5 genomes, 878 marker genes, 111 marker sets) -Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) -Flavobacterium Flavobacterium (20 genomes, 575 marker genes, 320 marker sets) -Flexibacter Flexibacter (3 genomes, 877 marker genes, 663 marker sets) -Francisella Francisella (40 genomes, 787 marker genes, 238 marker sets) -Frankia Frankia (11 genomes, 597 marker genes, 285 marker sets) -Fusobacterium Fusobacterium (21 genomes, 502 marker genes, 210 marker sets) -Gallibacterium Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets) -Gardnerella Gardnerella (14 genomes, 621 marker genes, 237 marker sets) -Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) -Geobacillus Geobacillus (15 genomes, 823 marker genes, 228 marker sets) -Geobacter Geobacter (10 genomes, 732 marker genes, 332 marker sets) -Gillisia Gillisia (2 genomes, 1096 marker genes, 276 marker sets) -Glaciecola Glaciecola (9 genomes, 1063 marker genes, 369 marker sets) -Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) -Gluconacetobacter Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets) -Gluconobacter Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets) -Glycomyces Glycomyces (2 genomes, 1177 marker genes, 326 marker sets) -Gordonia Gordonia (26 genomes, 670 marker genes, 298 marker sets) -Gramella Gramella (3 genomes, 1089 marker genes, 213 marker sets) -Granulicatella Granulicatella (2 genomes, 891 marker genes, 249 marker sets) -Granulicella Granulicella (2 genomes, 1075 marker genes, 507 marker sets) -Haemophilus Haemophilus (35 genomes, 829 marker genes, 480 marker sets) -Hahella Hahella (2 genomes, 1567 marker genes, 475 marker sets) -Halalkalicoccus Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets) -Halanaerobium Halanaerobium (2 genomes, 898 marker genes, 186 marker sets) -Haliea Haliea (2 genomes, 1214 marker genes, 329 marker sets) -Haloarcula Haloarcula (7 genomes, 842 marker genes, 250 marker sets) -Halobacillus Halobacillus (3 genomes, 1266 marker genes, 292 marker sets) -Halobacterium Halobacterium (3 genomes, 704 marker genes, 224 marker sets) -Halobiforma Halobiforma (2 genomes, 1026 marker genes, 320 marker sets) -Halococcus Halococcus (2 genomes, 767 marker genes, 347 marker sets) -Haloferax Haloferax (10 genomes, 763 marker genes, 229 marker sets) -Halomicrobium Halomicrobium (2 genomes, 970 marker genes, 233 marker sets) -Halomonas Halomonas (11 genomes, 840 marker genes, 268 marker sets) -Haloquadratum Haloquadratum (3 genomes, 798 marker genes, 192 marker sets) -Halorubrum Halorubrum (4 genomes, 710 marker genes, 295 marker sets) -Haloterrigena Haloterrigena (2 genomes, 826 marker genes, 332 marker sets) -Helicobacter Helicobacter (33 genomes, 490 marker genes, 276 marker sets) -Herbaspirillum Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets) -Hippea Hippea (3 genomes, 979 marker genes, 157 marker sets) -Hirschia Hirschia (2 genomes, 1333 marker genes, 222 marker sets) -Histophilus Histophilus (2 genomes, 1341 marker genes, 98 marker sets) -Hydrogenobacter Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets) -Hydrogenobaculum Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets) -Hymenobacter Hymenobacter (3 genomes, 998 marker genes, 370 marker sets) -Hyphomicrobium Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets) -Idiomarina Idiomarina (5 genomes, 1057 marker genes, 247 marker sets) -Isoptericola Isoptericola (2 genomes, 1351 marker genes, 168 marker sets) -Janibacter Janibacter (2 genomes, 1001 marker genes, 385 marker sets) -Janthinobacterium Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets) -Jeotgalicoccus Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets) -Jonesia Jonesia (2 genomes, 1211 marker genes, 191 marker sets) -Jonquetella Jonquetella (2 genomes, 987 marker genes, 78 marker sets) -Kaistia Kaistia (2 genomes, 1516 marker genes, 278 marker sets) -Kandleria Kandleria (3 genomes, 1026 marker genes, 154 marker sets) -Kangiella Kangiella (2 genomes, 1480 marker genes, 165 marker sets) -Kingella Kingella (3 genomes, 1040 marker genes, 614 marker sets) -Klebsiella Klebsiella (29 genomes, 1359 marker genes, 348 marker sets) -Labrenzia Labrenzia (2 genomes, 1431 marker genes, 424 marker sets) -Lachnobacterium Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets) -Lachnospira Lachnospira (3 genomes, 1045 marker genes, 196 marker sets) -Lactobacillus Lactobacillus (135 genomes, 409 marker genes, 155 marker sets) -Lactococcus Lactococcus (14 genomes, 683 marker genes, 238 marker sets) -Laribacter Laribacter (2 genomes, 1579 marker genes, 150 marker sets) -Leeuwenhoekiella Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets) -Legionella Legionella (18 genomes, 695 marker genes, 290 marker sets) -Leifsonia Leifsonia (2 genomes, 888 marker genes, 212 marker sets) -Leisingera Leisingera (3 genomes, 1200 marker genes, 365 marker sets) -Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) -Leptospira Leptospira (4 genomes, 1176 marker genes, 280 marker sets) -Leptotrichia Leptotrichia (7 genomes, 750 marker genes, 335 marker sets) -Leucobacter Leucobacter (2 genomes, 948 marker genes, 255 marker sets) -Leuconostoc Leuconostoc (15 genomes, 611 marker genes, 181 marker sets) -Lewinella Lewinella (2 genomes, 1073 marker genes, 736 marker sets) -Listeria Listeria (24 genomes, 1137 marker genes, 165 marker sets) -Loktanella Loktanella (5 genomes, 1000 marker genes, 308 marker sets) -Luteimonas Luteimonas (2 genomes, 1277 marker genes, 311 marker sets) -Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) -Lysinibacillus Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets) -Lysobacter Lysobacter (2 genomes, 1235 marker genes, 265 marker sets) -Magnetospirillum Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets) -Mannheimia Mannheimia (4 genomes, 1320 marker genes, 245 marker sets) -Maribacter Maribacter (3 genomes, 905 marker genes, 290 marker sets) -Marinobacter Marinobacter (8 genomes, 993 marker genes, 273 marker sets) -Marinobacterium Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets) -Marinomonas Marinomonas (4 genomes, 1256 marker genes, 320 marker sets) -Mariprofundus Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets) -Maritimibacter Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets) -Massilia Massilia (3 genomes, 1363 marker genes, 402 marker sets) -Megamonas Megamonas (3 genomes, 1113 marker genes, 288 marker sets) -Megasphaera Megasphaera (7 genomes, 696 marker genes, 211 marker sets) -Meiothermus Meiothermus (7 genomes, 852 marker genes, 456 marker sets) -Mesoplasma Mesoplasma (5 genomes, 409 marker genes, 104 marker sets) -Mesorhizobium Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets) -Metallosphaera Metallosphaera (3 genomes, 690 marker genes, 177 marker sets) -Methanobacterium Methanobacterium (3 genomes, 797 marker genes, 214 marker sets) -Methanobrevibacter Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets) -Methanocaldococcus Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets) -Methanocella Methanocella (3 genomes, 712 marker genes, 317 marker sets) -Methanococcus Methanococcus (7 genomes, 710 marker genes, 377 marker sets) -Methanocorpusculum Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets) -Methanolobus Methanolobus (2 genomes, 944 marker genes, 240 marker sets) -Methanoplanus Methanoplanus (2 genomes, 830 marker genes, 217 marker sets) -Methanosaeta Methanosaeta (3 genomes, 700 marker genes, 354 marker sets) -Methanosarcina Methanosarcina (3 genomes, 849 marker genes, 306 marker sets) -Methanothermobacter Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets) -Methanothermococcus Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets) -Methanotorris Methanotorris (2 genomes, 891 marker genes, 279 marker sets) -Methylobacter Methylobacter (2 genomes, 1294 marker genes, 436 marker sets) -Methylobacterium Methylobacterium (16 genomes, 606 marker genes, 394 marker sets) -Methylococcus Methylococcus (2 genomes, 1613 marker genes, 188 marker sets) -Methylocystis Methylocystis (3 genomes, 1172 marker genes, 334 marker sets) -Methylomicrobium Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets) -Methylomonas Methylomonas (4 genomes, 1325 marker genes, 423 marker sets) -Methylophaga Methylophaga (4 genomes, 1119 marker genes, 219 marker sets) -Methylophilus Methylophilus (4 genomes, 1346 marker genes, 180 marker sets) -Methylopila Methylopila (2 genomes, 1430 marker genes, 482 marker sets) -Methylosarcina Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets) -Methylosinus Methylosinus (3 genomes, 1300 marker genes, 501 marker sets) -Methylotenera Methylotenera (6 genomes, 1078 marker genes, 217 marker sets) -Methyloversatilis Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets) -Methylovorus Methylovorus (2 genomes, 1496 marker genes, 132 marker sets) -Microbacterium Microbacterium (11 genomes, 623 marker genes, 280 marker sets) -Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) -Micromonospora Micromonospora (5 genomes, 921 marker genes, 349 marker sets) -Microvirga Microvirga (2 genomes, 1319 marker genes, 353 marker sets) -Mobiluncus Mobiluncus (8 genomes, 830 marker genes, 222 marker sets) -Moorella Moorella (2 genomes, 1125 marker genes, 231 marker sets) -Moraxella Moraxella (10 genomes, 915 marker genes, 523 marker sets) -Morganella Morganella (2 genomes, 1883 marker genes, 217 marker sets) -Mycobacterium Mycobacterium (100 genomes, 693 marker genes, 300 marker sets) -Mycoplasma Mycoplasma (83 genomes, 226 marker genes, 133 marker sets) -Myroides Myroides (7 genomes, 948 marker genes, 335 marker sets) -Natrialba Natrialba (3 genomes, 716 marker genes, 277 marker sets) -Natrinema Natrinema (3 genomes, 796 marker genes, 297 marker sets) -Natronobacterium Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets) -Natronorubrum Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets) -Neisseria Neisseria (47 genomes, 887 marker genes, 501 marker sets) -Neorickettsia Neorickettsia (2 genomes, 678 marker genes, 16 marker sets) -Nesterenkonia Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets) -Niabella Niabella (2 genomes, 1123 marker genes, 403 marker sets) -Nisaea Nisaea (2 genomes, 1230 marker genes, 423 marker sets) -Nitratireductor Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets) -Nitratiruptor Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets) -Nitrobacter Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets) -Nitrosococcus Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets) -Nitrosomonas Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets) -Nitrosospira Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets) -Nocardia Nocardia (6 genomes, 799 marker genes, 372 marker sets) -Nocardioides Nocardioides (8 genomes, 683 marker genes, 299 marker sets) -Nocardiopsis Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets) -Nostoc Nostoc (5 genomes, 995 marker genes, 585 marker sets) -Novosphingobium Novosphingobium (5 genomes, 907 marker genes, 296 marker sets) -Oceanicaulis Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets) -Oceanicola Oceanicola (4 genomes, 998 marker genes, 439 marker sets) -Oceanimonas Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets) -Oceanobacillus Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets) -Oceanospirillum Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets) -Ochrobactrum Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets) -Octadecabacter Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets) -Odoribacter Odoribacter (2 genomes, 1031 marker genes, 350 marker sets) -Oenococcus Oenococcus (13 genomes, 679 marker genes, 136 marker sets) -Oligella Oligella (2 genomes, 1242 marker genes, 186 marker sets) -Oligotropha Oligotropha (2 genomes, 1592 marker genes, 192 marker sets) -Olleya Olleya (2 genomes, 1165 marker genes, 249 marker sets) -Olsenella Olsenella (2 genomes, 781 marker genes, 213 marker sets) -Oribacterium Oribacterium (5 genomes, 555 marker genes, 211 marker sets) -Orientia Orientia (2 genomes, 651 marker genes, 94 marker sets) -Ornithobacterium Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets) -Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) -Oxalobacter Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets) -Paenibacillus Paenibacillus (33 genomes, 473 marker genes, 180 marker sets) -Pantoea Pantoea (10 genomes, 1403 marker genes, 316 marker sets) -Parabacteroides Parabacteroides (6 genomes, 970 marker genes, 371 marker sets) -Parachlamydia Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets) -Paracoccus Paracoccus (8 genomes, 917 marker genes, 340 marker sets) -Paraprevotella Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets) -Parascardovia Parascardovia (2 genomes, 908 marker genes, 87 marker sets) -Pasteurella Pasteurella (8 genomes, 1083 marker genes, 458 marker sets) -Patulibacter Patulibacter (2 genomes, 1012 marker genes, 347 marker sets) -Pectobacterium Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets) -Pediococcus Pediococcus (7 genomes, 664 marker genes, 140 marker sets) -Pedobacter Pedobacter (5 genomes, 742 marker genes, 322 marker sets) -Pelobacter Pelobacter (2 genomes, 958 marker genes, 487 marker sets) -Pelodictyon Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets) -Pelosinus Pelosinus (3 genomes, 1539 marker genes, 333 marker sets) -Peptoniphilus Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets) -Peptostreptococcus Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets) -Persephonella Persephonella (3 genomes, 1036 marker genes, 256 marker sets) -Phaeobacter Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets) -Photobacterium Photobacterium (6 genomes, 1105 marker genes, 326 marker sets) -Photorhabdus Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets) -Planctomyces Planctomyces (3 genomes, 790 marker genes, 552 marker sets) -Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) -Planococcus Planococcus (2 genomes, 1321 marker genes, 253 marker sets) -Pleomorphomonas Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets) -Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) -Polaribacter Polaribacter (3 genomes, 942 marker genes, 301 marker sets) -Polaromonas Polaromonas (4 genomes, 1001 marker genes, 336 marker sets) -Polynucleobacter Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets) -Pontibacillus Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets) -Pontibacter Pontibacter (2 genomes, 1139 marker genes, 379 marker sets) -Porphyromonas Porphyromonas (18 genomes, 569 marker genes, 346 marker sets) -Prevotella Prevotella (65 genomes, 522 marker genes, 281 marker sets) -Prochlorococcus Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets) -Promicromonospora Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets) -Propionibacterium Propionibacterium (35 genomes, 632 marker genes, 302 marker sets) -Propionimicrobium Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets) -Proteus Proteus (2 genomes, 1888 marker genes, 231 marker sets) -Providencia Providencia (6 genomes, 1517 marker genes, 302 marker sets) -Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) -Pseudoalteromonas Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets) -Pseudobutyrivibrio Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets) -Pseudoclavibacter Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets) -Pseudogulbenkiania Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets) -Pseudomonas Pseudomonas (182 genomes, 833 marker genes, 312 marker sets) -Pseudonocardia Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets) -Pseudovibrio Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets) -Pseudoxanthomonas Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets) -Psychrobacter Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets) -Psychroflexus Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets) -Psychromonas Psychromonas (5 genomes, 1062 marker genes, 326 marker sets) -Pyrobaculum Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets) -Pyrococcus Pyrococcus (6 genomes, 654 marker genes, 266 marker sets) -Rahnella Rahnella (2 genomes, 1981 marker genes, 296 marker sets) -Ralstonia Ralstonia (14 genomes, 893 marker genes, 294 marker sets) -Rheinheimera Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets) -Rhizobium Rhizobium (40 genomes, 863 marker genes, 345 marker sets) -Rhodanobacter Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets) -Rhodobacter Rhodobacter (8 genomes, 992 marker genes, 372 marker sets) -Rhodococcus Rhodococcus (14 genomes, 715 marker genes, 302 marker sets) -Rhodonellum Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets) -Rhodopirellula Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets) -Rhodopseudomonas Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets) -Rhodospirillum Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets) -Rhodothermus Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets) -Rickettsia Rickettsia (43 genomes, 662 marker genes, 110 marker sets) -Riemerella Riemerella (6 genomes, 888 marker genes, 396 marker sets) -Roseburia Roseburia (2 genomes, 975 marker genes, 303 marker sets) -Roseiflexus Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets) -Roseobacter Roseobacter (7 genomes, 850 marker genes, 348 marker sets) -Roseomonas Roseomonas (2 genomes, 1576 marker genes, 318 marker sets) -Roseovarius Roseovarius (3 genomes, 1134 marker genes, 423 marker sets) -Rothia Rothia (6 genomes, 884 marker genes, 217 marker sets) -Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) -Rubrobacter Rubrobacter (2 genomes, 991 marker genes, 269 marker sets) -Ruegeria Ruegeria (7 genomes, 996 marker genes, 358 marker sets) -Ruminococcus Ruminococcus (13 genomes, 436 marker genes, 242 marker sets) -Runella Runella (3 genomes, 1097 marker genes, 525 marker sets) -Saccharibacillus Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets) -Saccharomonospora Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets) -Salinicoccus Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets) -Salinimicrobium Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets) -Salinispora Salinispora (45 genomes, 1031 marker genes, 284 marker sets) -Salmonella Salmonella (21 genomes, 1529 marker genes, 266 marker sets) -Saprospira Saprospira (2 genomes, 1147 marker genes, 326 marker sets) -Sediminibacterium Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets) -Selenomonas Selenomonas (21 genomes, 710 marker genes, 294 marker sets) -Serratia Serratia (13 genomes, 985 marker genes, 293 marker sets) -Shewanella Shewanella (26 genomes, 989 marker genes, 339 marker sets) -Shigella Shigella (34 genomes, 1437 marker genes, 348 marker sets) -Slackia Slackia (4 genomes, 616 marker genes, 193 marker sets) -Solirubrobacter Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets) -Solobacterium Solobacterium (2 genomes, 877 marker genes, 170 marker sets) -Sphaerochaeta Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets) -Sphingobacterium Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets) -Sphingobium Sphingobium (3 genomes, 1179 marker genes, 403 marker sets) -Sphingomonas Sphingomonas (11 genomes, 713 marker genes, 351 marker sets) -Sphingopyxis Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets) -Spirochaeta Spirochaeta (8 genomes, 487 marker genes, 211 marker sets) -Spirosoma Spirosoma (4 genomes, 993 marker genes, 460 marker sets) -Sporosarcina Sporosarcina (3 genomes, 999 marker genes, 269 marker sets) -Staphylococcus Staphylococcus (60 genomes, 773 marker genes, 178 marker sets) -Staphylothermus Staphylothermus (2 genomes, 676 marker genes, 104 marker sets) -Stenotrophomonas Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets) -Streptococcus Streptococcus (226 genomes, 551 marker genes, 259 marker sets) -Streptomyces Streptomyces (58 genomes, 506 marker genes, 264 marker sets) -Sulfitobacter Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets) -Sulfobacillus Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets) -Sulfolobus Sulfolobus (15 genomes, 621 marker genes, 152 marker sets) -Sulfurihydrogenibium Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets) -Sulfurimonas Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets) -Sulfurospirillum Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets) -Sutterella Sutterella (3 genomes, 935 marker genes, 232 marker sets) -Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) -Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) -Tannerella Tannerella (2 genomes, 822 marker genes, 441 marker sets) -Taylorella Taylorella (4 genomes, 1069 marker genes, 71 marker sets) -Tenacibaculum Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets) -Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) -Tetragenococcus Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets) -Thalassospira Thalassospira (3 genomes, 1406 marker genes, 326 marker sets) -Thauera Thauera (6 genomes, 1175 marker genes, 334 marker sets) -Thermacetogenium Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets) -Thermaerobacter Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets) -Thermanaerovibrio Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets) -Thermoanaerobacter Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets) -Thermoanaerobacterium Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets) -Thermobifida Thermobifida (2 genomes, 1421 marker genes, 225 marker sets) -Thermococcus Thermococcus (9 genomes, 552 marker genes, 286 marker sets) -Thermocrinis Thermocrinis (2 genomes, 941 marker genes, 515 marker sets) -Thermocrispum Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets) -Thermodesulfatator Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets) -Thermodesulfobacterium Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets) -Thermodesulfovibrio Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets) -Thermogladius Thermogladius (2 genomes, 711 marker genes, 60 marker sets) -Thermoplasma Thermoplasma (2 genomes, 733 marker genes, 167 marker sets) -Thermoproteus Thermoproteus (3 genomes, 600 marker genes, 281 marker sets) -Thermosipho Thermosipho (2 genomes, 1009 marker genes, 148 marker sets) -Thermotoga Thermotoga (8 genomes, 768 marker genes, 325 marker sets) -Thermus Thermus (14 genomes, 841 marker genes, 311 marker sets) -Thioalkalimicrobium Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets) -Thioalkalivibrio Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets) -Thiobacillus Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets) -Thiomicrospira Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets) -Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) -Thiothrix Thiothrix (4 genomes, 1003 marker genes, 417 marker sets) -Tolumonas Tolumonas (2 genomes, 1431 marker genes, 200 marker sets) -Treponema Treponema (28 genomes, 326 marker genes, 173 marker sets) -Turicibacter Turicibacter (2 genomes, 1183 marker genes, 236 marker sets) -Ureaplasma Ureaplasma (15 genomes, 372 marker genes, 51 marker sets) -Variovorax Variovorax (7 genomes, 1114 marker genes, 351 marker sets) -Veillonella Veillonella (13 genomes, 757 marker genes, 219 marker sets) -Verrucomicrobium Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets) -Vibrio Vibrio (70 genomes, 1084 marker genes, 381 marker sets) -Vulcanisaeta Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets) -Weissella Weissella (6 genomes, 534 marker genes, 171 marker sets) -Wigglesworthia Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets) -Wohlfahrtiimonas Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets) -Wolbachia Wolbachia (8 genomes, 427 marker genes, 275 marker sets) -Xanthobacter Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets) -Xanthomonas Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets) -Xenorhabdus Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets) -Xylella Xylella (10 genomes, 1207 marker genes, 178 marker sets) -Yersinia Yersinia (35 genomes, 1383 marker genes, 341 marker sets) -Zymomonas Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)
--- a/tool-data/life.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Prokaryote Prokaryote (5656 genomes, 56 marker genes, 24 marker sets)
--- a/tool-data/order.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,100 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acholeplasmatales Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets) -Acidilobales Acidilobales (3 genomes, 558 marker genes, 236 marker sets) -Acidithiobacillales Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets) -Acidobacteriales Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets) -Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) -Actinomycetales Actinomycetales (620 genomes, 256 marker genes, 152 marker sets) -Aeromonadales Aeromonadales (23 genomes, 456 marker genes, 237 marker sets) -Alteromonadales Alteromonadales (116 genomes, 519 marker genes, 267 marker sets) -Aquificales Aquificales (18 genomes, 486 marker genes, 369 marker sets) -Archaeoglobales Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets) -Bacillales Bacillales (331 genomes, 319 marker genes, 134 marker sets) -Bacteroidales Bacteroidales (210 genomes, 402 marker genes, 267 marker sets) -Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets) -Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) -Bdellovibrionales Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets) -Bifidobacteriales Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets) -Burkholderiales Burkholderiales (194 genomes, 427 marker genes, 216 marker sets) -Campylobacterales Campylobacterales (107 genomes, 458 marker genes, 273 marker sets) -Cardiobacteriales Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets) -Caulobacterales Caulobacterales (15 genomes, 644 marker genes, 366 marker sets) -Chlamydiales Chlamydiales (64 genomes, 455 marker genes, 185 marker sets) -Chlorobiales Chlorobiales (12 genomes, 612 marker genes, 333 marker sets) -Chloroflexales Chloroflexales (8 genomes, 501 marker genes, 342 marker sets) -Chromatiales Chromatiales (92 genomes, 595 marker genes, 283 marker sets) -Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets) -Clostridiales Clostridiales (395 genomes, 202 marker genes, 114 marker sets) -Coriobacteriales Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets) -Cytophagales Cytophagales (48 genomes, 438 marker genes, 328 marker sets) -Deferribacterales Deferribacterales (6 genomes, 564 marker genes, 339 marker sets) -Dehalococcoidales Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets) -Deinococcales Deinococcales (17 genomes, 563 marker genes, 388 marker sets) -Desulfobacterales Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets) -Desulfovibrionales Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets) -Desulfurellales Desulfurellales (4 genomes, 817 marker genes, 252 marker sets) -Desulfurococcales Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets) -Desulfuromonadales Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets) -Dictyoglomales Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets) -Enterobacteriales Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets) -Entomoplasmatales Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets) -Erysipelotrichales Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets) -Flavobacteriales Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets) -Fusobacteriales Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets) -Halanaerobiales Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets) -Halobacteriales Halobacteriales (59 genomes, 367 marker genes, 241 marker sets) -Holophagales Holophagales (2 genomes, 883 marker genes, 459 marker sets) -Hydrogenophilales Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets) -Ignavibacteriales Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets) -Lactobacillales Lactobacillales (490 genomes, 335 marker genes, 183 marker sets) -Legionellales Legionellales (23 genomes, 545 marker genes, 269 marker sets) -Mariprofundales Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets) -Methanobacteriales Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets) -Methanocellales Methanocellales (3 genomes, 712 marker genes, 317 marker sets) -Methanococcales Methanococcales (16 genomes, 610 marker genes, 439 marker sets) -Methanomicrobiales Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets) -Methanosarcinales Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets) -Methylococcales Methylococcales (15 genomes, 684 marker genes, 348 marker sets) -Methylophilales Methylophilales (16 genomes, 685 marker genes, 234 marker sets) -Mycoplasmatales Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets) -Myxococcales Myxococcales (8 genomes, 534 marker genes, 348 marker sets) -Nautiliales Nautiliales (4 genomes, 712 marker genes, 351 marker sets) -Neisseriales Neisseriales (69 genomes, 658 marker genes, 446 marker sets) -Nitrosomonadales Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets) -Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets) -Nitrospirales Nitrospirales (4 genomes, 676 marker genes, 379 marker sets) -Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets) -Oceanospirillales Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets) -Opitutales Opitutales (3 genomes, 859 marker genes, 521 marker sets) -Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets) -Pasteurellales Pasteurellales (83 genomes, 767 marker genes, 440 marker sets) -Planctomycetales Planctomycetales (10 genomes, 370 marker genes, 265 marker sets) -Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets) -Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets) -Pseudomonadales Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets) -Rhizobiales Rhizobiales (349 genomes, 407 marker genes, 244 marker sets) -Rhodobacterales Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets) -Rhodocyclales Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets) -Rhodospirillales Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets) -Rickettsiales Rickettsiales (81 genomes, 325 marker genes, 210 marker sets) -Rubrobacterales Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets) -Selenomonadales Selenomonadales (64 genomes, 334 marker genes, 167 marker sets) -Solirubrobacterales Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets) -Sphingobacteriales Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets) -Sphingomonadales Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets) -Spirochaetales Spirochaetales (71 genomes, 218 marker genes, 127 marker sets) -Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets) -Sulfolobales Sulfolobales (20 genomes, 499 marker genes, 141 marker sets) -Synergistales Synergistales (13 genomes, 452 marker genes, 160 marker sets) -Thermales Thermales (23 genomes, 585 marker genes, 331 marker sets) -Thermoanaerobacterales Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets) -Thermococcales Thermococcales (16 genomes, 500 marker genes, 315 marker sets) -Thermodesulfobacteriales Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets) -Thermoplasmatales Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets) -Thermoproteales Thermoproteales (13 genomes, 315 marker genes, 257 marker sets) -Thermotogales Thermotogales (14 genomes, 460 marker genes, 267 marker sets) -Thiotrichales Thiotrichales (64 genomes, 406 marker genes, 251 marker sets) -Verrucomicrobiales Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets) -Vibrionales Vibrionales (80 genomes, 922 marker genes, 367 marker sets) -Xanthomonadales Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)
--- a/tool-data/phylum.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,28 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acidobacteria Acidobacteria (15 genomes, 399 marker genes, 276 marker sets) -Actinobacteria Actinobacteria (731 genomes, 204 marker genes, 119 marker sets) -Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets) -Bacteroidetes Bacteroidetes (419 genomes, 286 marker genes, 195 marker sets) -Chlamydiae Chlamydiae (64 genomes, 455 marker genes, 185 marker sets) -Chlorobi Chlorobi (12 genomes, 612 marker genes, 333 marker sets) -Chloroflexi Chloroflexi (20 genomes, 225 marker genes, 149 marker sets) -Crenarchaeota Crenarchaeota (54 genomes, 217 marker genes, 168 marker sets) -Cyanobacteria Cyanobacteria (129 genomes, 472 marker genes, 368 marker sets) -Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets) -Deinococcus-Thermus Deinococcus-Thermus (40 genomes, 528 marker genes, 359 marker sets) -Dictyoglomi Dictyoglomi (2 genomes, 1060 marker genes, 103 marker sets) -Euryarchaeota Euryarchaeota (146 genomes, 188 marker genes, 125 marker sets) -Firmicutes Firmicutes (1349 genomes, 172 marker genes, 99 marker sets) -Fusobacteria Fusobacteria (32 genomes, 289 marker genes, 159 marker sets) -Ignavibacteriae Ignavibacteriae (2 genomes, 1003 marker genes, 383 marker sets) -Nitrospirae Nitrospirae (4 genomes, 676 marker genes, 379 marker sets) -Planctomycetes Planctomycetes (11 genomes, 360 marker genes, 256 marker sets) -Proteobacteria Proteobacteria (2343 genomes, 182 marker genes, 119 marker sets) -Spirochaetes Spirochaetes (71 genomes, 218 marker genes, 127 marker sets) -Synergistetes Synergistetes (13 genomes, 452 marker genes, 160 marker sets) -Tenericutes Tenericutes (119 genomes, 177 marker genes, 105 marker sets) -Thaumarchaeota Thaumarchaeota (4 genomes, 548 marker genes, 265 marker sets) -Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets) -Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets) -Verrucomicrobia Verrucomicrobia (12 genomes, 346 marker genes, 245 marker sets)
--- a/tool-data/species.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,510 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acetobacter pasteurianus Acetobacter pasteurianus (9 genomes, 1384 marker genes, 160 marker sets) -Achromobacter piechaudii Achromobacter piechaudii (2 genomes, 1606 marker genes, 428 marker sets) -Achromobacter xylosoxidans Achromobacter xylosoxidans (2 genomes, 1503 marker genes, 445 marker sets) -Acidaminococcus intestini Acidaminococcus intestini (2 genomes, 1109 marker genes, 140 marker sets) -Acidithiobacillus caldus Acidithiobacillus caldus (2 genomes, 1196 marker genes, 153 marker sets) -Acidithiobacillus ferrooxidans Acidithiobacillus ferrooxidans (2 genomes, 1293 marker genes, 128 marker sets) -Acidovorax avenae Acidovorax avenae (2 genomes, 1633 marker genes, 327 marker sets) -Acinetobacter baumanni Acinetobacter baumanni (5 genomes, 1413 marker genes, 231 marker sets) -Acinetobacter baumannii Acinetobacter baumannii (20 genomes, 1018 marker genes, 298 marker sets) -Acinetobacter baylyi Acinetobacter baylyi (2 genomes, 1608 marker genes, 195 marker sets) -Acinetobacter calcoaceticus Acinetobacter calcoaceticus (5 genomes, 1444 marker genes, 252 marker sets) -Acinetobacter johnsonii Acinetobacter johnsonii (2 genomes, 1439 marker genes, 204 marker sets) -Acinetobacter junii Acinetobacter junii (4 genomes, 1336 marker genes, 222 marker sets) -Acinetobacter lwoffii Acinetobacter lwoffii (3 genomes, 1363 marker genes, 221 marker sets) -Acinetobacter nosocomialis Acinetobacter nosocomialis (2 genomes, 1542 marker genes, 214 marker sets) -Acinetobacter radioresistens Acinetobacter radioresistens (5 genomes, 1354 marker genes, 199 marker sets) -Actinobacillus pleuropneumoniae Actinobacillus pleuropneumoniae (13 genomes, 1332 marker genes, 210 marker sets) -Actinobaculum schaalii Actinobaculum schaalii (2 genomes, 951 marker genes, 128 marker sets) -Actinomyces graevenitzii Actinomyces graevenitzii (2 genomes, 1014 marker genes, 144 marker sets) -Actinomyces naeslundii Actinomyces naeslundii (2 genomes, 1068 marker genes, 299 marker sets) -Actinomyces neuii Actinomyces neuii (2 genomes, 1053 marker genes, 132 marker sets) -Actinomyces odontolyticus Actinomyces odontolyticus (2 genomes, 1061 marker genes, 179 marker sets) -Aeromonas hydrophila Aeromonas hydrophila (3 genomes, 1847 marker genes, 312 marker sets) -Aeromonas veronii Aeromonas veronii (6 genomes, 1752 marker genes, 329 marker sets) -Aggregatibacter actinomycetemcomitans Aggregatibacter actinomycetemcomitans (10 genomes, 1164 marker genes, 217 marker sets) -Agrobacterium tumefaciens Agrobacterium tumefaciens (2 genomes, 1574 marker genes, 278 marker sets) -Alicycliphilus denitrificans Alicycliphilus denitrificans (2 genomes, 1650 marker genes, 258 marker sets) -Alicyclobacillus acidocaldarius Alicyclobacillus acidocaldarius (2 genomes, 1329 marker genes, 157 marker sets) -Alloscardovia omnicolens Alloscardovia omnicolens (2 genomes, 950 marker genes, 116 marker sets) -Alteromonas macleodii Alteromonas macleodii (4 genomes, 1539 marker genes, 274 marker sets) -Amycolatopsis mediterranei Amycolatopsis mediterranei (3 genomes, 1557 marker genes, 526 marker sets) -Anabaena circinalis Anabaena circinalis (2 genomes, 1357 marker genes, 362 marker sets) -Anaerococcus prevotii Anaerococcus prevotii (2 genomes, 900 marker genes, 143 marker sets) -Anaeromyxobacter dehalogenans Anaeromyxobacter dehalogenans (2 genomes, 1441 marker genes, 335 marker sets) -Anoxybacillus flavithermus Anoxybacillus flavithermus (2 genomes, 1366 marker genes, 163 marker sets) -Archaeoglobus fulgidus Archaeoglobus fulgidus (2 genomes, 975 marker genes, 111 marker sets) -Arcobacter butzleri Arcobacter butzleri (4 genomes, 1067 marker genes, 144 marker sets) -Arthrobacter nicotinovorans Arthrobacter nicotinovorans (2 genomes, 1382 marker genes, 287 marker sets) -Arthrospira platensis Arthrospira platensis (2 genomes, 1432 marker genes, 419 marker sets) -Atopobium vaginae Atopobium vaginae (2 genomes, 714 marker genes, 165 marker sets) -Azotobacter vinelandii Azotobacter vinelandii (3 genomes, 1930 marker genes, 269 marker sets) -Bacillus amyloliquefaciens Bacillus amyloliquefaciens (9 genomes, 1568 marker genes, 226 marker sets) -Bacillus anthracis Bacillus anthracis (11 genomes, 1465 marker genes, 354 marker sets) -Bacillus cereus Bacillus cereus (20 genomes, 1114 marker genes, 319 marker sets) -Bacillus coagulans Bacillus coagulans (4 genomes, 1365 marker genes, 245 marker sets) -Bacillus licheniformis Bacillus licheniformis (4 genomes, 1711 marker genes, 246 marker sets) -Bacillus megaterium Bacillus megaterium (3 genomes, 1495 marker genes, 292 marker sets) -Bacillus methanolicus Bacillus methanolicus (2 genomes, 1444 marker genes, 206 marker sets) -Bacillus pumilus Bacillus pumilus (2 genomes, 1707 marker genes, 218 marker sets) -Bacillus subtilis Bacillus subtilis (14 genomes, 1489 marker genes, 247 marker sets) -Bacillus thuringiensis Bacillus thuringiensis (11 genomes, 1205 marker genes, 357 marker sets) -Bacteroides caccae Bacteroides caccae (2 genomes, 1239 marker genes, 256 marker sets) -Bacteroides dorei Bacteroides dorei (4 genomes, 1172 marker genes, 271 marker sets) -Bacteroides eggerthii Bacteroides eggerthii (2 genomes, 1171 marker genes, 205 marker sets) -Bacteroides fragilis Bacteroides fragilis (10 genomes, 1128 marker genes, 303 marker sets) -Bacteroides massiliensis Bacteroides massiliensis (2 genomes, 1340 marker genes, 274 marker sets) -Bacteroides ovatus Bacteroides ovatus (6 genomes, 1115 marker genes, 317 marker sets) -Bacteroides stercoris Bacteroides stercoris (2 genomes, 1202 marker genes, 210 marker sets) -Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron (6 genomes, 1177 marker genes, 313 marker sets) -Bacteroides uniformis Bacteroides uniformis (2 genomes, 1214 marker genes, 253 marker sets) -Bacteroides vulgatus Bacteroides vulgatus (5 genomes, 1162 marker genes, 307 marker sets) -Bacteroides xylanisolvens Bacteroides xylanisolvens (12 genomes, 1025 marker genes, 325 marker sets) -Bankia setacea Bankia setacea (2 genomes, 1388 marker genes, 332 marker sets) -Bartonella clarridgeiae Bartonella clarridgeiae (2 genomes, 990 marker genes, 52 marker sets) -Bartonella doshiae Bartonella doshiae (2 genomes, 1022 marker genes, 73 marker sets) -Bartonella elizabethae Bartonella elizabethae (3 genomes, 1021 marker genes, 88 marker sets) -Bartonella grahamii Bartonella grahamii (2 genomes, 1010 marker genes, 95 marker sets) -Bartonella quintana Bartonella quintana (2 genomes, 945 marker genes, 55 marker sets) -Bartonella tamiae Bartonella tamiae (2 genomes, 1379 marker genes, 94 marker sets) -Bartonella vinsonii Bartonella vinsonii (4 genomes, 964 marker genes, 71 marker sets) -Bartonella washoensis Bartonella washoensis (2 genomes, 1014 marker genes, 79 marker sets) -Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus (2 genomes, 1015 marker genes, 305 marker sets) -Bifidobacterium adolescentis Bifidobacterium adolescentis (3 genomes, 886 marker genes, 116 marker sets) -Bifidobacterium animalis Bifidobacterium animalis (9 genomes, 871 marker genes, 113 marker sets) -Bifidobacterium bifidum Bifidobacterium bifidum (5 genomes, 952 marker genes, 140 marker sets) -Bifidobacterium breve Bifidobacterium breve (6 genomes, 871 marker genes, 166 marker sets) -Bifidobacterium dentium Bifidobacterium dentium (3 genomes, 991 marker genes, 156 marker sets) -Bifidobacterium longum Bifidobacterium longum (15 genomes, 750 marker genes, 214 marker sets) -Bifidobacterium pseudolongum Bifidobacterium pseudolongum (2 genomes, 933 marker genes, 123 marker sets) -Blautia producta Blautia producta (2 genomes, 1444 marker genes, 376 marker sets) -Blautia wexlerae Blautia wexlerae (2 genomes, 1092 marker genes, 270 marker sets) -Bordetella holmesii Bordetella holmesii (2 genomes, 1523 marker genes, 215 marker sets) -Bordetella pertussis Bordetella pertussis (2 genomes, 1599 marker genes, 225 marker sets) -Borrelia afzelii Borrelia afzelii (2 genomes, 598 marker genes, 23 marker sets) -Borrelia burgdorferi Borrelia burgdorferi (7 genomes, 567 marker genes, 36 marker sets) -Borrelia garinii Borrelia garinii (3 genomes, 596 marker genes, 51 marker sets) -Brachyspira hyodysenteriae Brachyspira hyodysenteriae (2 genomes, 1143 marker genes, 201 marker sets) -Brachyspira pilosicoli Brachyspira pilosicoli (4 genomes, 951 marker genes, 213 marker sets) -Bradyrhizobium elkanii Bradyrhizobium elkanii (6 genomes, 1117 marker genes, 415 marker sets) -Bradyrhizobium japonicum Bradyrhizobium japonicum (9 genomes, 1153 marker genes, 389 marker sets) -Brevibacillus laterosporus Brevibacillus laterosporus (2 genomes, 1538 marker genes, 311 marker sets) -Brucella abortus Brucella abortus (20 genomes, 1513 marker genes, 206 marker sets) -Brucella canis Brucella canis (7 genomes, 1561 marker genes, 163 marker sets) -Brucella ceti Brucella ceti (4 genomes, 1586 marker genes, 299 marker sets) -Brucella melitensis Brucella melitensis (20 genomes, 1435 marker genes, 270 marker sets) -Brucella ovis Brucella ovis (9 genomes, 1599 marker genes, 181 marker sets) -Brucella pinnipedialis Brucella pinnipedialis (2 genomes, 1625 marker genes, 189 marker sets) -Brucella suis Brucella suis (16 genomes, 1524 marker genes, 276 marker sets) -Buchnera aphidicola Buchnera aphidicola (10 genomes, 380 marker genes, 35 marker sets) -Burkholderia cenocepacia Burkholderia cenocepacia (5 genomes, 1585 marker genes, 398 marker sets) -Burkholderia cepacia Burkholderia cepacia (5 genomes, 1353 marker genes, 330 marker sets) -Burkholderia mallei Burkholderia mallei (9 genomes, 1503 marker genes, 397 marker sets) -Burkholderia mimosarum Burkholderia mimosarum (2 genomes, 1813 marker genes, 442 marker sets) -Burkholderia multivorans Burkholderia multivorans (4 genomes, 1688 marker genes, 361 marker sets) -Burkholderia pseudomallei Burkholderia pseudomallei (12 genomes, 1626 marker genes, 455 marker sets) -Butyrivibrio fibrisolvens Butyrivibrio fibrisolvens (4 genomes, 1083 marker genes, 302 marker sets) -Butyrivibrio proteoclasticus Butyrivibrio proteoclasticus (2 genomes, 1016 marker genes, 327 marker sets) -Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kristjanssonii (3 genomes, 1326 marker genes, 159 marker sets) -Campylobacter coli Campylobacter coli (20 genomes, 955 marker genes, 188 marker sets) -Campylobacter curvus Campylobacter curvus (2 genomes, 1090 marker genes, 92 marker sets) -Campylobacter fetus Campylobacter fetus (2 genomes, 1143 marker genes, 80 marker sets) -Campylobacter jejuni Campylobacter jejuni (20 genomes, 903 marker genes, 161 marker sets) -Campylobacter showae Campylobacter showae (2 genomes, 1098 marker genes, 118 marker sets) -Campylobacter upsaliensis Campylobacter upsaliensis (3 genomes, 1032 marker genes, 103 marker sets) -Candidatus Pelagibacter ubique Candidatus Pelagibacter ubique (10 genomes, 779 marker genes, 128 marker sets) -Candidatus Pelagibacter-like SAR11 Candidatus Pelagibacter-like SAR11 (3 genomes, 911 marker genes, 76 marker sets) -Capnocytophaga ochracea Capnocytophaga ochracea (3 genomes, 1077 marker genes, 205 marker sets) -Caulobacter crescentus Caulobacter crescentus (2 genomes, 1670 marker genes, 221 marker sets) -Cellulomonas flavigena Cellulomonas flavigena (2 genomes, 1110 marker genes, 325 marker sets) -Chlamydia muridarum Chlamydia muridarum (3 genomes, 683 marker genes, 35 marker sets) -Chlamydia psittaci Chlamydia psittaci (20 genomes, 613 marker genes, 74 marker sets) -Chlamydia trachomatis Chlamydia trachomatis (20 genomes, 641 marker genes, 41 marker sets) -Chlamydophila pneumoniae Chlamydophila pneumoniae (5 genomes, 683 marker genes, 57 marker sets) -Chlamydophila psittaci Chlamydophila psittaci (7 genomes, 706 marker genes, 40 marker sets) -Chlorobium phaeobacteroides Chlorobium phaeobacteroides (2 genomes, 1081 marker genes, 255 marker sets) -Citrobacter freundii Citrobacter freundii (3 genomes, 1937 marker genes, 327 marker sets) -Clavibacter michiganensis Clavibacter michiganensis (2 genomes, 1152 marker genes, 228 marker sets) -Clostridium acetobutylicum Clostridium acetobutylicum (3 genomes, 1498 marker genes, 242 marker sets) -Clostridium beijerinckii Clostridium beijerinckii (2 genomes, 1312 marker genes, 318 marker sets) -Clostridium bolteae Clostridium bolteae (5 genomes, 1147 marker genes, 316 marker sets) -Clostridium botulinum Clostridium botulinum (15 genomes, 653 marker genes, 197 marker sets) -Clostridium butyricum Clostridium butyricum (3 genomes, 1300 marker genes, 285 marker sets) -Clostridium clariflavum Clostridium clariflavum (2 genomes, 1344 marker genes, 273 marker sets) -Clostridium clostridioforme Clostridium clostridioforme (7 genomes, 995 marker genes, 304 marker sets) -Clostridium difficile Clostridium difficile (20 genomes, 1098 marker genes, 329 marker sets) -Clostridium glycolicum Clostridium glycolicum (2 genomes, 1385 marker genes, 238 marker sets) -Clostridium kluyveri Clostridium kluyveri (2 genomes, 1377 marker genes, 212 marker sets) -Clostridium pasteurianum Clostridium pasteurianum (2 genomes, 1184 marker genes, 276 marker sets) -Clostridium perfringens Clostridium perfringens (3 genomes, 1152 marker genes, 185 marker sets) -Clostridium sporogenes Clostridium sporogenes (2 genomes, 1302 marker genes, 242 marker sets) -Clostridium symbiosum Clostridium symbiosum (2 genomes, 1222 marker genes, 322 marker sets) -Clostridium thermocellum Clostridium thermocellum (5 genomes, 1325 marker genes, 239 marker sets) -Comamonas testosteroni Comamonas testosteroni (3 genomes, 1563 marker genes, 349 marker sets) -Corynebacterium accolens Corynebacterium accolens (2 genomes, 1192 marker genes, 206 marker sets) -Corynebacterium aurimucosum Corynebacterium aurimucosum (2 genomes, 1240 marker genes, 186 marker sets) -Corynebacterium diphtheriae Corynebacterium diphtheriae (15 genomes, 1041 marker genes, 134 marker sets) -Corynebacterium efficiens Corynebacterium efficiens (2 genomes, 1320 marker genes, 210 marker sets) -Corynebacterium glucuronolyticum Corynebacterium glucuronolyticum (3 genomes, 1217 marker genes, 176 marker sets) -Corynebacterium glutamicum Corynebacterium glutamicum (6 genomes, 1184 marker genes, 228 marker sets) -Corynebacterium halotolerans Corynebacterium halotolerans (2 genomes, 1353 marker genes, 183 marker sets) -Corynebacterium jeikeium Corynebacterium jeikeium (2 genomes, 1143 marker genes, 157 marker sets) -Corynebacterium matruchotii Corynebacterium matruchotii (2 genomes, 1191 marker genes, 181 marker sets) -Corynebacterium pseudotuberculosis Corynebacterium pseudotuberculosis (14 genomes, 1001 marker genes, 123 marker sets) -Corynebacterium ulcerans Corynebacterium ulcerans (3 genomes, 1221 marker genes, 112 marker sets) -Corynebacterium urealyticum Corynebacterium urealyticum (2 genomes, 1146 marker genes, 117 marker sets) -Coxiella burnetii Coxiella burnetii (5 genomes, 1047 marker genes, 146 marker sets) -Cupriavidus metallidurans Cupriavidus metallidurans (2 genomes, 1706 marker genes, 419 marker sets) -Cupriavidus necator Cupriavidus necator (2 genomes, 1517 marker genes, 379 marker sets) -Cupriavidus taiwanensis Cupriavidus taiwanensis (3 genomes, 1681 marker genes, 365 marker sets) -Dechloromonas agitata Dechloromonas agitata (2 genomes, 1533 marker genes, 220 marker sets) -Dehalococcoides mccartyi Dehalococcoides mccartyi (4 genomes, 803 marker genes, 50 marker sets) -Deinococcus radiodurans Deinococcus radiodurans (2 genomes, 1383 marker genes, 206 marker sets) -Delftia acidovorans Delftia acidovorans (2 genomes, 1757 marker genes, 421 marker sets) -Desulfovibrio africanus Desulfovibrio africanus (3 genomes, 1285 marker genes, 284 marker sets) -Desulfovibrio alaskensis Desulfovibrio alaskensis (2 genomes, 1327 marker genes, 223 marker sets) -Desulfovibrio desulfuricans Desulfovibrio desulfuricans (2 genomes, 941 marker genes, 423 marker sets) -Desulfovibrio vulgaris Desulfovibrio vulgaris (3 genomes, 1187 marker genes, 344 marker sets) -Dickeya dadantii Dickeya dadantii (3 genomes, 1728 marker genes, 307 marker sets) -Dorea longicatena Dorea longicatena (2 genomes, 1005 marker genes, 208 marker sets) -Edwardsiella tarda Edwardsiella tarda (2 genomes, 1903 marker genes, 174 marker sets) -Ehrlichia ruminantium Ehrlichia ruminantium (3 genomes, 760 marker genes, 58 marker sets) -Elizabethkingia anophelis Elizabethkingia anophelis (3 genomes, 1251 marker genes, 240 marker sets) -Ensifer fredii Ensifer fredii (2 genomes, 1548 marker genes, 357 marker sets) -Ensifer medicae Ensifer medicae (5 genomes, 1601 marker genes, 343 marker sets) -Ensifer meliloti Ensifer meliloti (15 genomes, 1320 marker genes, 381 marker sets) -Enterobacter aerogenes Enterobacter aerogenes (2 genomes, 2126 marker genes, 298 marker sets) -Enterobacter cloacae Enterobacter cloacae (6 genomes, 1787 marker genes, 306 marker sets) -Enterococcus casseliflavus Enterococcus casseliflavus (4 genomes, 1174 marker genes, 221 marker sets) -Enterococcus faecalis Enterococcus faecalis (20 genomes, 792 marker genes, 298 marker sets) -Enterococcus faecium Enterococcus faecium (20 genomes, 885 marker genes, 257 marker sets) -Enterococcus gallinarum Enterococcus gallinarum (2 genomes, 1257 marker genes, 191 marker sets) -Eremococcus coleocola Eremococcus coleocola (2 genomes, 922 marker genes, 109 marker sets) -Erwinia amylovora Erwinia amylovora (3 genomes, 1878 marker genes, 177 marker sets) -Erwinia pyrifoliae Erwinia pyrifoliae (2 genomes, 1942 marker genes, 184 marker sets) -Escherichia coli Escherichia coli (20 genomes, 1628 marker genes, 307 marker sets) -Escherichia fergusonii Escherichia fergusonii (2 genomes, 2134 marker genes, 277 marker sets) -Eubacterium cellulosolvens Eubacterium cellulosolvens (2 genomes, 1078 marker genes, 198 marker sets) -Eubacterium saburreum Eubacterium saburreum (2 genomes, 1186 marker genes, 223 marker sets) -Exiguobacterium sibiricum Exiguobacterium sibiricum (2 genomes, 1429 marker genes, 175 marker sets) -Exiguobacterium undae Exiguobacterium undae (2 genomes, 1484 marker genes, 173 marker sets) -Facklamia hominis Facklamia hominis (2 genomes, 955 marker genes, 100 marker sets) -Finegoldia magna Finegoldia magna (5 genomes, 878 marker genes, 111 marker sets) -Francisella noatunensis Francisella noatunensis (6 genomes, 904 marker genes, 235 marker sets) -Francisella noatunensis noatunensis Francisella noatunensis noatunensis (2 genomes, 1070 marker genes, 209 marker sets) -Francisella novicida Francisella novicida (4 genomes, 1052 marker genes, 152 marker sets) -Francisella philomiragia Francisella philomiragia (6 genomes, 1127 marker genes, 132 marker sets) -Francisella tularensis Francisella tularensis (20 genomes, 850 marker genes, 176 marker sets) -Fusobacterium necrophorum Fusobacterium necrophorum (2 genomes, 1080 marker genes, 117 marker sets) -Fusobacterium nucleatum Fusobacterium nucleatum (6 genomes, 884 marker genes, 256 marker sets) -Gallibacterium anatis Gallibacterium anatis (2 genomes, 1519 marker genes, 168 marker sets) -Gardnerella vaginalis Gardnerella vaginalis (14 genomes, 621 marker genes, 237 marker sets) -Gemella haemolysans Gemella haemolysans (2 genomes, 961 marker genes, 126 marker sets) -Geobacillus debilis Geobacillus debilis (2 genomes, 1380 marker genes, 195 marker sets) -Geobacter sulfurreducens Geobacter sulfurreducens (2 genomes, 1487 marker genes, 199 marker sets) -Glaciecola agarilytica Glaciecola agarilytica (2 genomes, 1802 marker genes, 312 marker sets) -Gluconacetobacter diazotrophicus Gluconacetobacter diazotrophicus (2 genomes, 1506 marker genes, 190 marker sets) -Gordonia amicalis Gordonia amicalis (2 genomes, 1448 marker genes, 324 marker sets) -Gordonia polyisoprenivorans Gordonia polyisoprenivorans (3 genomes, 1452 marker genes, 366 marker sets) -Haemophilus ducreyi Haemophilus ducreyi (4 genomes, 1128 marker genes, 128 marker sets) -Haemophilus haemolyticus Haemophilus haemolyticus (3 genomes, 1281 marker genes, 149 marker sets) -Haemophilus influenzae Haemophilus influenzae (17 genomes, 924 marker genes, 157 marker sets) -Haemophilus parainfluenzae Haemophilus parainfluenzae (5 genomes, 1176 marker genes, 631 marker sets) -Haemophilus parasuis Haemophilus parasuis (2 genomes, 1385 marker genes, 136 marker sets) -Halalkalicoccus jeotgali Halalkalicoccus jeotgali (2 genomes, 1003 marker genes, 212 marker sets) -Haloarcula californiae Haloarcula californiae (2 genomes, 1047 marker genes, 260 marker sets) -Haloarcula vallismortis Haloarcula vallismortis (2 genomes, 1075 marker genes, 244 marker sets) -Halobiforma lacisalsi Halobiforma lacisalsi (2 genomes, 1026 marker genes, 320 marker sets) -Haloferax denitrificans Haloferax denitrificans (2 genomes, 1052 marker genes, 231 marker sets) -Haloferax mucosum Haloferax mucosum (2 genomes, 1030 marker genes, 193 marker sets) -Haloferax sulfurifontis Haloferax sulfurifontis (2 genomes, 1054 marker genes, 237 marker sets) -Haloferax volcanii Haloferax volcanii (3 genomes, 864 marker genes, 230 marker sets) -Haloquadratum walsbyi Haloquadratum walsbyi (3 genomes, 798 marker genes, 192 marker sets) -Helicobacter cetorum Helicobacter cetorum (2 genomes, 927 marker genes, 162 marker sets) -Helicobacter pylori Helicobacter pylori (20 genomes, 773 marker genes, 143 marker sets) -Histophilus somni Histophilus somni (2 genomes, 1341 marker genes, 98 marker sets) -Hydrogenobacter thermophilus Hydrogenobacter thermophilus (2 genomes, 1116 marker genes, 52 marker sets) -Hyphomicrobium denitrificans Hyphomicrobium denitrificans (2 genomes, 1390 marker genes, 196 marker sets) -Isoptericola variabilis Isoptericola variabilis (2 genomes, 1351 marker genes, 168 marker sets) -Jonquetella anthropi Jonquetella anthropi (2 genomes, 987 marker genes, 78 marker sets) -Kandleria vitulina Kandleria vitulina (3 genomes, 1026 marker genes, 154 marker sets) -Klebsiella oxytoca Klebsiella oxytoca (5 genomes, 1725 marker genes, 377 marker sets) -Klebsiella pneumoniae Klebsiella pneumoniae (20 genomes, 1598 marker genes, 383 marker sets) -Lachnobacterium bovis Lachnobacterium bovis (2 genomes, 1164 marker genes, 173 marker sets) -Lachnospira multipara Lachnospira multipara (3 genomes, 1045 marker genes, 196 marker sets) -Lactobacillus acidophilus Lactobacillus acidophilus (3 genomes, 800 marker genes, 127 marker sets) -Lactobacillus amylovorus Lactobacillus amylovorus (2 genomes, 865 marker genes, 112 marker sets) -Lactobacillus brevis Lactobacillus brevis (4 genomes, 752 marker genes, 203 marker sets) -Lactobacillus buchneri Lactobacillus buchneri (5 genomes, 853 marker genes, 186 marker sets) -Lactobacillus casei Lactobacillus casei (16 genomes, 772 marker genes, 222 marker sets) -Lactobacillus crispatus Lactobacillus crispatus (8 genomes, 762 marker genes, 178 marker sets) -Lactobacillus delbrueckii Lactobacillus delbrueckii (7 genomes, 742 marker genes, 159 marker sets) -Lactobacillus fermentum Lactobacillus fermentum (3 genomes, 949 marker genes, 129 marker sets) -Lactobacillus gasseri Lactobacillus gasseri (5 genomes, 692 marker genes, 131 marker sets) -Lactobacillus helveticus Lactobacillus helveticus (4 genomes, 731 marker genes, 148 marker sets) -Lactobacillus iners Lactobacillus iners (15 genomes, 639 marker genes, 125 marker sets) -Lactobacillus jensenii Lactobacillus jensenii (5 genomes, 813 marker genes, 106 marker sets) -Lactobacillus johnsonii Lactobacillus johnsonii (4 genomes, 777 marker genes, 130 marker sets) -Lactobacillus paracasei Lactobacillus paracasei (3 genomes, 1022 marker genes, 225 marker sets) -Lactobacillus reuteri Lactobacillus reuteri (9 genomes, 829 marker genes, 185 marker sets) -Lactobacillus rhamnosus Lactobacillus rhamnosus (10 genomes, 952 marker genes, 246 marker sets) -Lactobacillus ruminis Lactobacillus ruminis (2 genomes, 989 marker genes, 143 marker sets) -Lactobacillus salivarius Lactobacillus salivarius (5 genomes, 864 marker genes, 162 marker sets) -Lactococcus garvieae Lactococcus garvieae (4 genomes, 927 marker genes, 157 marker sets) -Lactococcus lactis Lactococcus lactis (10 genomes, 856 marker genes, 190 marker sets) -Laribacter hongkongensis Laribacter hongkongensis (2 genomes, 1579 marker genes, 150 marker sets) -Legionella longbeachae Legionella longbeachae (2 genomes, 1434 marker genes, 256 marker sets) -Legionella pneumophila Legionella pneumophila (8 genomes, 1140 marker genes, 213 marker sets) -Legionella sainthelensi Legionella sainthelensi (2 genomes, 1272 marker genes, 299 marker sets) -Leptospira meyeri Leptospira meyeri (2 genomes, 1272 marker genes, 278 marker sets) -Leptotrichia goodfellowii Leptotrichia goodfellowii (2 genomes, 1086 marker genes, 182 marker sets) -Leuconostoc citreum Leuconostoc citreum (4 genomes, 908 marker genes, 102 marker sets) -Leuconostoc gelidum Leuconostoc gelidum (2 genomes, 985 marker genes, 105 marker sets) -Leuconostoc kimchii Leuconostoc kimchii (2 genomes, 990 marker genes, 97 marker sets) -Leuconostoc mesenteroides Leuconostoc mesenteroides (3 genomes, 870 marker genes, 110 marker sets) -Listeria monocytogenes Listeria monocytogenes (20 genomes, 1262 marker genes, 179 marker sets) -Loktanella vestfoldensis Loktanella vestfoldensis (2 genomes, 1360 marker genes, 189 marker sets) -Lysinibacillus fusiformis Lysinibacillus fusiformis (2 genomes, 1610 marker genes, 299 marker sets) -Mannheimia haemolytica Mannheimia haemolytica (3 genomes, 1446 marker genes, 156 marker sets) -Mariprofundus ferrooxydans Mariprofundus ferrooxydans (2 genomes, 1329 marker genes, 184 marker sets) -Megasphaera elsdenii Megasphaera elsdenii (2 genomes, 1168 marker genes, 145 marker sets) -Megasphaera genomosp. Megasphaera genomosp. (2 genomes, 973 marker genes, 196 marker sets) -Mesorhizobium ciceri Mesorhizobium ciceri (3 genomes, 1605 marker genes, 386 marker sets) -Mesorhizobium loti Mesorhizobium loti (6 genomes, 1317 marker genes, 375 marker sets) -Methanobrevibacter smithii Methanobrevibacter smithii (3 genomes, 932 marker genes, 82 marker sets) -Methanococcus maripaludis Methanococcus maripaludis (4 genomes, 961 marker genes, 83 marker sets) -Methylobacterium extorquens Methylobacterium extorquens (4 genomes, 1402 marker genes, 302 marker sets) -Methylococcus capsulatus Methylococcus capsulatus (2 genomes, 1613 marker genes, 188 marker sets) -Methylotenera mobilis Methylotenera mobilis (2 genomes, 1353 marker genes, 143 marker sets) -Methylotenera versatilis Methylotenera versatilis (2 genomes, 1251 marker genes, 231 marker sets) -Methyloversatilis universalis Methyloversatilis universalis (3 genomes, 1615 marker genes, 262 marker sets) -Mobiluncus curtisii Mobiluncus curtisii (4 genomes, 1009 marker genes, 115 marker sets) -Mobiluncus mulieris Mobiluncus mulieris (4 genomes, 980 marker genes, 165 marker sets) -Moraxella catarrhalis Moraxella catarrhalis (8 genomes, 1131 marker genes, 113 marker sets) -Mycobacterium abscessus Mycobacterium abscessus (20 genomes, 1230 marker genes, 333 marker sets) -Mycobacterium avium Mycobacterium avium (3 genomes, 1306 marker genes, 324 marker sets) -Mycobacterium bovis Mycobacterium bovis (4 genomes, 1386 marker genes, 231 marker sets) -Mycobacterium canettii Mycobacterium canettii (4 genomes, 1378 marker genes, 260 marker sets) -Mycobacterium gilvum Mycobacterium gilvum (2 genomes, 1474 marker genes, 320 marker sets) -Mycobacterium intracellulare Mycobacterium intracellulare (3 genomes, 1375 marker genes, 278 marker sets) -Mycobacterium leprae Mycobacterium leprae (2 genomes, 1053 marker genes, 195 marker sets) -Mycobacterium marinum Mycobacterium marinum (2 genomes, 1415 marker genes, 358 marker sets) -Mycobacterium massiliense Mycobacterium massiliense (11 genomes, 1291 marker genes, 291 marker sets) -Mycobacterium rhodesiae Mycobacterium rhodesiae (2 genomes, 1202 marker genes, 411 marker sets) -Mycobacterium smegmatis Mycobacterium smegmatis (2 genomes, 1151 marker genes, 407 marker sets) -Mycobacterium tuberculosis Mycobacterium tuberculosis (20 genomes, 1077 marker genes, 383 marker sets) -Mycoplasma agalactiae Mycoplasma agalactiae (2 genomes, 457 marker genes, 44 marker sets) -Mycoplasma arginini Mycoplasma arginini (2 genomes, 361 marker genes, 170 marker sets) -Mycoplasma bovis Mycoplasma bovis (3 genomes, 447 marker genes, 52 marker sets) -Mycoplasma canis Mycoplasma canis (5 genomes, 460 marker genes, 37 marker sets) -Mycoplasma fermentans Mycoplasma fermentans (2 genomes, 506 marker genes, 49 marker sets) -Mycoplasma gallisepticum Mycoplasma gallisepticum (12 genomes, 451 marker genes, 45 marker sets) -Mycoplasma genitalium Mycoplasma genitalium (2 genomes, 435 marker genes, 21 marker sets) -Mycoplasma hominis Mycoplasma hominis (2 genomes, 411 marker genes, 42 marker sets) -Mycoplasma hyopneumoniae Mycoplasma hyopneumoniae (3 genomes, 417 marker genes, 47 marker sets) -Mycoplasma hyorhinis Mycoplasma hyorhinis (5 genomes, 427 marker genes, 49 marker sets) -Mycoplasma leachii Mycoplasma leachii (2 genomes, 551 marker genes, 49 marker sets) -Mycoplasma mycoides Mycoplasma mycoides (4 genomes, 476 marker genes, 64 marker sets) -Mycoplasma pneumoniae Mycoplasma pneumoniae (3 genomes, 448 marker genes, 33 marker sets) -Mycoplasma synoviae Mycoplasma synoviae (2 genomes, 457 marker genes, 39 marker sets) -Myroides odoratimimus Myroides odoratimimus (6 genomes, 1001 marker genes, 318 marker sets) -Natronobacterium gregoryi Natronobacterium gregoryi (2 genomes, 1012 marker genes, 271 marker sets) -Natronorubrum tibetense Natronorubrum tibetense (2 genomes, 1039 marker genes, 332 marker sets) -Neisseria flavescens Neisseria flavescens (2 genomes, 1305 marker genes, 164 marker sets) -Neisseria gonorrhoeae Neisseria gonorrhoeae (14 genomes, 1201 marker genes, 205 marker sets) -Neisseria meningitidis Neisseria meningitidis (20 genomes, 997 marker genes, 216 marker sets) -Novosphingobium nitrogenifigens Novosphingobium nitrogenifigens (2 genomes, 1642 marker genes, 232 marker sets) -Oceanicaulis alexandrii Oceanicaulis alexandrii (2 genomes, 1398 marker genes, 175 marker sets) -Ochrobactrum intermedium Ochrobactrum intermedium (2 genomes, 1521 marker genes, 251 marker sets) -Oenococcus oeni Oenococcus oeni (12 genomes, 770 marker genes, 112 marker sets) -Oligotropha carboxidovorans Oligotropha carboxidovorans (2 genomes, 1592 marker genes, 192 marker sets) -Orientia tsutsugamushi Orientia tsutsugamushi (2 genomes, 651 marker genes, 94 marker sets) -Ornithobacterium rhinotracheale Ornithobacterium rhinotracheale (2 genomes, 1172 marker genes, 138 marker sets) -Oxalobacter formigenes Oxalobacter formigenes (2 genomes, 1179 marker genes, 133 marker sets) -Paenibacillus alvei Paenibacillus alvei (3 genomes, 1429 marker genes, 356 marker sets) -Paenibacillus mucilaginosus Paenibacillus mucilaginosus (2 genomes, 1584 marker genes, 433 marker sets) -Pantoea ananatis Pantoea ananatis (4 genomes, 1893 marker genes, 263 marker sets) -Parabacteroides merdae Parabacteroides merdae (3 genomes, 1201 marker genes, 260 marker sets) -Parachlamydia acanthamoebae Parachlamydia acanthamoebae (2 genomes, 1064 marker genes, 203 marker sets) -Parascardovia denticolens Parascardovia denticolens (2 genomes, 908 marker genes, 87 marker sets) -Pasteurella multocida Pasteurella multocida (5 genomes, 1400 marker genes, 149 marker sets) -Pectobacterium carotovorum Pectobacterium carotovorum (2 genomes, 1949 marker genes, 285 marker sets) -Pediococcus acidilactici Pediococcus acidilactici (4 genomes, 836 marker genes, 109 marker sets) -Pediococcus pentosaceus Pediococcus pentosaceus (2 genomes, 936 marker genes, 98 marker sets) -Pelosinus fermentans Pelosinus fermentans (2 genomes, 1545 marker genes, 299 marker sets) -Peptoniphilus lacrimalis Peptoniphilus lacrimalis (2 genomes, 937 marker genes, 98 marker sets) -Peptostreptococcus anaerobius Peptostreptococcus anaerobius (2 genomes, 1024 marker genes, 136 marker sets) -Persephonella lauensis Persephonella lauensis (2 genomes, 1194 marker genes, 108 marker sets) -Phaeobacter gallaeciensis Phaeobacter gallaeciensis (4 genomes, 1371 marker genes, 329 marker sets) -Photobacterium profundum Photobacterium profundum (2 genomes, 1714 marker genes, 406 marker sets) -Polynucleobacter necessarius Polynucleobacter necessarius (3 genomes, 968 marker genes, 106 marker sets) -Porphyromonas asaccharolytica Porphyromonas asaccharolytica (2 genomes, 1014 marker genes, 131 marker sets) -Porphyromonas gingivalis Porphyromonas gingivalis (8 genomes, 974 marker genes, 194 marker sets) -Prevotella amnii Prevotella amnii (2 genomes, 985 marker genes, 155 marker sets) -Prevotella bivia Prevotella bivia (2 genomes, 1077 marker genes, 150 marker sets) -Prevotella brevis Prevotella brevis (2 genomes, 1125 marker genes, 185 marker sets) -Prevotella buccae Prevotella buccae (2 genomes, 1106 marker genes, 220 marker sets) -Prevotella dentalis Prevotella dentalis (2 genomes, 1171 marker genes, 188 marker sets) -Prevotella denticola Prevotella denticola (3 genomes, 1015 marker genes, 186 marker sets) -Prevotella intermedia Prevotella intermedia (2 genomes, 1108 marker genes, 149 marker sets) -Prevotella maculosa Prevotella maculosa (2 genomes, 1057 marker genes, 211 marker sets) -Prevotella melaninogenica Prevotella melaninogenica (2 genomes, 1039 marker genes, 225 marker sets) -Prevotella micans Prevotella micans (2 genomes, 1048 marker genes, 165 marker sets) -Prevotella oralis Prevotella oralis (2 genomes, 1159 marker genes, 165 marker sets) -Prevotella oris Prevotella oris (3 genomes, 1006 marker genes, 202 marker sets) -Prevotella ruminicola Prevotella ruminicola (2 genomes, 1088 marker genes, 224 marker sets) -Prevotella timonensis Prevotella timonensis (2 genomes, 983 marker genes, 206 marker sets) -Prevotella veroralis Prevotella veroralis (2 genomes, 986 marker genes, 200 marker sets) -Prochlorococcus marinus Prochlorococcus marinus (13 genomes, 862 marker genes, 183 marker sets) -Propionibacterium acidifaciens Propionibacterium acidifaciens (2 genomes, 539 marker genes, 376 marker sets) -Propionibacterium acidipropionici Propionibacterium acidipropionici (2 genomes, 1277 marker genes, 233 marker sets) -Propionibacterium acnes Propionibacterium acnes (20 genomes, 1053 marker genes, 218 marker sets) -Propionibacterium avidum Propionibacterium avidum (2 genomes, 1195 marker genes, 150 marker sets) -Propionimicrobium lymphophilum Propionimicrobium lymphophilum (2 genomes, 1112 marker genes, 105 marker sets) -Proteus mirabilis Proteus mirabilis (2 genomes, 1888 marker genes, 231 marker sets) -Providencia alcalifaciens Providencia alcalifaciens (2 genomes, 1875 marker genes, 218 marker sets) -Providencia stuartii Providencia stuartii (2 genomes, 1918 marker genes, 220 marker sets) -Pseudoalteromonas haloplanktis Pseudoalteromonas haloplanktis (2 genomes, 1596 marker genes, 348 marker sets) -Pseudoalteromonas luteoviolacea Pseudoalteromonas luteoviolacea (2 genomes, 1493 marker genes, 389 marker sets) -Pseudoalteromonas piscicida Pseudoalteromonas piscicida (2 genomes, 1903 marker genes, 366 marker sets) -Pseudobutyrivibrio ruminis Pseudobutyrivibrio ruminis (3 genomes, 937 marker genes, 238 marker sets) -Pseudomonas aeruginosa Pseudomonas aeruginosa (19 genomes, 1617 marker genes, 469 marker sets) -Pseudomonas brassicacearum Pseudomonas brassicacearum (2 genomes, 1982 marker genes, 393 marker sets) -Pseudomonas chlororaphis Pseudomonas chlororaphis (2 genomes, 1904 marker genes, 402 marker sets) -Pseudomonas fluorescens Pseudomonas fluorescens (9 genomes, 1154 marker genes, 347 marker sets) -Pseudomonas fulva Pseudomonas fulva (2 genomes, 1488 marker genes, 484 marker sets) -Pseudomonas mendocina Pseudomonas mendocina (3 genomes, 1635 marker genes, 338 marker sets) -Pseudomonas monteilii Pseudomonas monteilii (3 genomes, 1761 marker genes, 372 marker sets) -Pseudomonas putida Pseudomonas putida (13 genomes, 1246 marker genes, 410 marker sets) -Pseudomonas stutzeri Pseudomonas stutzeri (13 genomes, 1189 marker genes, 403 marker sets) -Pseudomonas syringae Pseudomonas syringae (20 genomes, 1439 marker genes, 395 marker sets) -Pseudomonas thermotolerans Pseudomonas thermotolerans (2 genomes, 1731 marker genes, 219 marker sets) -Pseudomonas umsongensis Pseudomonas umsongensis (2 genomes, 1945 marker genes, 378 marker sets) -Pseudomonas viridiflava Pseudomonas viridiflava (3 genomes, 1876 marker genes, 420 marker sets) -Pseudoxanthomonas suwonensis Pseudoxanthomonas suwonensis (3 genomes, 1424 marker genes, 280 marker sets) -Pyrococcus furiosus Pyrococcus furiosus (2 genomes, 981 marker genes, 99 marker sets) -Ralstonia pickettii Ralstonia pickettii (2 genomes, 1715 marker genes, 287 marker sets) -Ralstonia solanacearum Ralstonia solanacearum (4 genomes, 1543 marker genes, 320 marker sets) -Rhizobium etli Rhizobium etli (2 genomes, 1571 marker genes, 331 marker sets) -Rhizobium leguminosarum Rhizobium leguminosarum (20 genomes, 1104 marker genes, 354 marker sets) -Rhodobacter sphaeroides Rhodobacter sphaeroides (5 genomes, 1409 marker genes, 281 marker sets) -Rhodococcus equi Rhodococcus equi (2 genomes, 1456 marker genes, 325 marker sets) -Rhodococcus erythropolis Rhodococcus erythropolis (2 genomes, 1456 marker genes, 402 marker sets) -Rhodococcus pyridinivorans Rhodococcus pyridinivorans (2 genomes, 1329 marker genes, 319 marker sets) -Rhodonellum psychrophilum Rhodonellum psychrophilum (2 genomes, 1473 marker genes, 372 marker sets) -Rhodopseudomonas palustris Rhodopseudomonas palustris (7 genomes, 1180 marker genes, 388 marker sets) -Rhodospirillum rubrum Rhodospirillum rubrum (2 genomes, 1731 marker genes, 250 marker sets) -Rhodothermus marinus Rhodothermus marinus (3 genomes, 1379 marker genes, 216 marker sets) -Rickettsia canadensis Rickettsia canadensis (2 genomes, 783 marker genes, 35 marker sets) -Rickettsia massiliae Rickettsia massiliae (2 genomes, 794 marker genes, 67 marker sets) -Rickettsia prowazekii Rickettsia prowazekii (5 genomes, 753 marker genes, 44 marker sets) -Rickettsia rickettsii Rickettsia rickettsii (14 genomes, 737 marker genes, 72 marker sets) -Rickettsia slovaca Rickettsia slovaca (2 genomes, 807 marker genes, 50 marker sets) -Rickettsia typhi Rickettsia typhi (3 genomes, 786 marker genes, 24 marker sets) -Riemerella anatipestifer Riemerella anatipestifer (5 genomes, 999 marker genes, 139 marker sets) -Rothia dentocariosa Rothia dentocariosa (2 genomes, 1057 marker genes, 145 marker sets) -Rothia mucilaginosa Rothia mucilaginosa (3 genomes, 990 marker genes, 143 marker sets) -Rubrivivax benzoatilyticus Rubrivivax benzoatilyticus (2 genomes, 1846 marker genes, 310 marker sets) -Ruminococcus albus Ruminococcus albus (2 genomes, 1187 marker genes, 284 marker sets) -Ruminococcus flavefaciens Ruminococcus flavefaciens (5 genomes, 783 marker genes, 287 marker sets) -Ruminococcus gnavus Ruminococcus gnavus (2 genomes, 1114 marker genes, 199 marker sets) -Saccharomonospora azurea Saccharomonospora azurea (2 genomes, 1323 marker genes, 314 marker sets) -Salinispora arenicola Salinispora arenicola (20 genomes, 1171 marker genes, 326 marker sets) -Salinispora pacifica Salinispora pacifica (20 genomes, 1005 marker genes, 278 marker sets) -Salinispora tropica Salinispora tropica (5 genomes, 1307 marker genes, 311 marker sets) -Salmonella enterica Salmonella enterica (20 genomes, 1643 marker genes, 283 marker sets) -Saprospira grandis Saprospira grandis (2 genomes, 1147 marker genes, 326 marker sets) -Selenomonas artemidis Selenomonas artemidis (2 genomes, 1227 marker genes, 134 marker sets) -Selenomonas bovis Selenomonas bovis (2 genomes, 1210 marker genes, 191 marker sets) -Selenomonas ruminantium Selenomonas ruminantium (4 genomes, 1010 marker genes, 375 marker sets) -Selenomonas sputigena Selenomonas sputigena (2 genomes, 1404 marker genes, 138 marker sets) -Serratia marcescens Serratia marcescens (2 genomes, 1727 marker genes, 324 marker sets) -Serratia plymuthica Serratia plymuthica (5 genomes, 1990 marker genes, 304 marker sets) -Serratia proteamaculans Serratia proteamaculans (2 genomes, 2115 marker genes, 304 marker sets) -Shewanella baltica Shewanella baltica (8 genomes, 1677 marker genes, 338 marker sets) -Shigella boydii Shigella boydii (6 genomes, 1605 marker genes, 348 marker sets) -Shigella dysenteriae Shigella dysenteriae (4 genomes, 1643 marker genes, 335 marker sets) -Shigella flexneri Shigella flexneri (18 genomes, 1512 marker genes, 333 marker sets) -Shigella sonnei Shigella sonnei (5 genomes, 1936 marker genes, 302 marker sets) -Solobacterium moorei Solobacterium moorei (2 genomes, 877 marker genes, 170 marker sets) -Sphingomonas melonis Sphingomonas melonis (3 genomes, 1562 marker genes, 203 marker sets) -Sphingomonas phyllosphaerae Sphingomonas phyllosphaerae (2 genomes, 1437 marker genes, 248 marker sets) -Spirochaeta thermophila Spirochaeta thermophila (2 genomes, 1122 marker genes, 152 marker sets) -Staphylococcus aureus Staphylococcus aureus (20 genomes, 1169 marker genes, 170 marker sets) -Staphylococcus epidermidis Staphylococcus epidermidis (20 genomes, 933 marker genes, 208 marker sets) -Staphylococcus hominis Staphylococcus hominis (2 genomes, 1209 marker genes, 107 marker sets) -Staphylococcus lugdunensis Staphylococcus lugdunensis (3 genomes, 1270 marker genes, 131 marker sets) -Staphylococcus pseudintermedius Staphylococcus pseudintermedius (2 genomes, 1324 marker genes, 134 marker sets) -Stenotrophomonas maltophilia Stenotrophomonas maltophilia (8 genomes, 1441 marker genes, 396 marker sets) -Streptococcus agalactiae Streptococcus agalactiae (20 genomes, 807 marker genes, 204 marker sets) -Streptococcus anginosus Streptococcus anginosus (5 genomes, 990 marker genes, 160 marker sets) -Streptococcus australis Streptococcus australis (2 genomes, 1197 marker genes, 124 marker sets) -Streptococcus bovis Streptococcus bovis (5 genomes, 976 marker genes, 140 marker sets) -Streptococcus dysgalactiae Streptococcus dysgalactiae (5 genomes, 982 marker genes, 204 marker sets) -Streptococcus equi Streptococcus equi (4 genomes, 961 marker genes, 136 marker sets) -Streptococcus gallolyticus Streptococcus gallolyticus (3 genomes, 1151 marker genes, 131 marker sets) -Streptococcus infantarius Streptococcus infantarius (2 genomes, 1097 marker genes, 118 marker sets) -Streptococcus infantis Streptococcus infantis (4 genomes, 971 marker genes, 131 marker sets) -Streptococcus intermedius Streptococcus intermedius (3 genomes, 1049 marker genes, 115 marker sets) -Streptococcus mitis Streptococcus mitis (11 genomes, 743 marker genes, 256 marker sets) -Streptococcus mutans Streptococcus mutans (8 genomes, 1053 marker genes, 121 marker sets) -Streptococcus oralis Streptococcus oralis (9 genomes, 871 marker genes, 196 marker sets) -Streptococcus parasanguinis Streptococcus parasanguinis (6 genomes, 999 marker genes, 203 marker sets) -Streptococcus parauberis Streptococcus parauberis (3 genomes, 969 marker genes, 126 marker sets) -Streptococcus pneumoniae Streptococcus pneumoniae (20 genomes, 845 marker genes, 160 marker sets) -Streptococcus pseudopneumoniae Streptococcus pseudopneumoniae (3 genomes, 1102 marker genes, 236 marker sets) -Streptococcus pseudoporcinus Streptococcus pseudoporcinus (2 genomes, 1166 marker genes, 114 marker sets) -Streptococcus pyogenes Streptococcus pyogenes (20 genomes, 885 marker genes, 150 marker sets) -Streptococcus salivarius Streptococcus salivarius (4 genomes, 1021 marker genes, 130 marker sets) -Streptococcus sanguinis Streptococcus sanguinis (13 genomes, 877 marker genes, 335 marker sets) -Streptococcus suis Streptococcus suis (14 genomes, 852 marker genes, 161 marker sets) -Streptococcus thermophilus Streptococcus thermophilus (6 genomes, 971 marker genes, 96 marker sets) -Streptococcus urinalis Streptococcus urinalis (2 genomes, 1107 marker genes, 100 marker sets) -Streptomyces cattleya Streptomyces cattleya (3 genomes, 1460 marker genes, 495 marker sets) -Sulfobacillus acidophilus Sulfobacillus acidophilus (2 genomes, 1273 marker genes, 192 marker sets) -Sulfolobus acidocaldarius Sulfolobus acidocaldarius (3 genomes, 819 marker genes, 115 marker sets) -Sulfolobus islandicus Sulfolobus islandicus (9 genomes, 778 marker genes, 149 marker sets) -Sulfolobus solfataricus Sulfolobus solfataricus (2 genomes, 822 marker genes, 116 marker sets) -Sutterella wadsworthensis Sutterella wadsworthensis (3 genomes, 935 marker genes, 232 marker sets) -Synechococcus elongatus Synechococcus elongatus (2 genomes, 1468 marker genes, 121 marker sets) -Taylorella asinigenitalis Taylorella asinigenitalis (2 genomes, 1125 marker genes, 58 marker sets) -Taylorella equigenitalis Taylorella equigenitalis (2 genomes, 1154 marker genes, 53 marker sets) -Teredinibacter turnerae Teredinibacter turnerae (8 genomes, 1640 marker genes, 312 marker sets) -Thauera linaloolentis Thauera linaloolentis (2 genomes, 1773 marker genes, 294 marker sets) -Thermacetogenium phaeum Thermacetogenium phaeum (2 genomes, 1344 marker genes, 157 marker sets) -Thermoanaerobacterium thermosaccharolyticum Thermoanaerobacterium thermosaccharolyticum (2 genomes, 1317 marker genes, 136 marker sets) -Thermobifida fusca Thermobifida fusca (2 genomes, 1421 marker genes, 225 marker sets) -Thermus oshimai Thermus oshimai (2 genomes, 1196 marker genes, 112 marker sets) -Thermus scotoductus Thermus scotoductus (2 genomes, 1098 marker genes, 162 marker sets) -Thermus thermophilus Thermus thermophilus (4 genomes, 1100 marker genes, 123 marker sets) -Thioalkalivibrio thiocyanoxidans Thioalkalivibrio thiocyanoxidans (2 genomes, 1159 marker genes, 330 marker sets) -Thiobacillus denitrificans Thiobacillus denitrificans (2 genomes, 1290 marker genes, 203 marker sets) -Treponema denticola Treponema denticola (9 genomes, 954 marker genes, 221 marker sets) -Treponema pallidum Treponema pallidum (3 genomes, 717 marker genes, 44 marker sets) -Treponema vincentii Treponema vincentii (2 genomes, 946 marker genes, 178 marker sets) -Ureaplasma parvum Ureaplasma parvum (5 genomes, 420 marker genes, 35 marker sets) -Ureaplasma urealyticum Ureaplasma urealyticum (10 genomes, 386 marker genes, 50 marker sets) -Variovorax paradoxus Variovorax paradoxus (5 genomes, 1314 marker genes, 368 marker sets) -Veillonella atypica Veillonella atypica (3 genomes, 1145 marker genes, 136 marker sets) -Veillonella parvula Veillonella parvula (2 genomes, 1174 marker genes, 97 marker sets) -Vibrio alginolyticus Vibrio alginolyticus (5 genomes, 1283 marker genes, 392 marker sets) -Vibrio cholerae Vibrio cholerae (20 genomes, 1729 marker genes, 348 marker sets) -Vibrio fischeri Vibrio fischeri (2 genomes, 1814 marker genes, 227 marker sets) -Vibrio harveyi Vibrio harveyi (3 genomes, 1674 marker genes, 373 marker sets) -Vibrio mimicus Vibrio mimicus (2 genomes, 1752 marker genes, 276 marker sets) -Vibrio parahaemolyticus Vibrio parahaemolyticus (12 genomes, 1733 marker genes, 363 marker sets) -Vibrio splendidus Vibrio splendidus (2 genomes, 1757 marker genes, 310 marker sets) -Vibrio vulnificus Vibrio vulnificus (5 genomes, 1802 marker genes, 386 marker sets) -Wigglesworthia glossinidia Wigglesworthia glossinidia (2 genomes, 679 marker genes, 9 marker sets) -Wohlfahrtiimonas chitiniclastica Wohlfahrtiimonas chitiniclastica (2 genomes, 1335 marker genes, 78 marker sets) -Wolbachia endosymbiont of Culex quinquefasciatus Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 747 marker genes, 56 marker sets) -Xanthomonas axonopodis Xanthomonas axonopodis (5 genomes, 1627 marker genes, 365 marker sets) -Xanthomonas campestris Xanthomonas campestris (5 genomes, 1623 marker genes, 336 marker sets) -Xanthomonas oryzae Xanthomonas oryzae (3 genomes, 1627 marker genes, 339 marker sets) -Xylella fastidiosa Xylella fastidiosa (10 genomes, 1207 marker genes, 178 marker sets) -Yersinia enterocolitica Yersinia enterocolitica (5 genomes, 1868 marker genes, 316 marker sets) -Yersinia pestis Yersinia pestis (20 genomes, 1683 marker genes, 330 marker sets) -Yersinia pseudotuberculosis Yersinia pseudotuberculosis (4 genomes, 1975 marker genes, 263 marker sets) -Zymomonas mobilis Zymomonas mobilis (3 genomes, 1142 marker genes, 133 marker sets)
--- a/tool_data_table_conf.xml.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,30 +0,0 @@ -<tables> - <table name="life_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/life.loc" /> - </table> - <table name="domain_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/domain.loc" /> - </table> - <table name="phylum_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/phylum.loc" /> - </table> - <table name="order_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/order.loc" /> - </table> - <table name="family_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/family.loc" /> - </table> - <table name="genus_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/genus.loc" /> - </table> - <table name="species_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="tool-data/species.loc" /> - </table> -</tables> \ No newline at end of file
--- a/tool_data_table_conf.xml.test Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<tables> - <table name="life_taxons" comment_char="#"> - <columns>value, name</columns> - <file path="${__HERE__}/test-data/life.loc" /> - </table> -</tables> \ No newline at end of file