Mercurial > repos > iuc > chira_map

diff chira_map.xml @ 3:39bb70c2764e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit aafb8e5de9023eeddd7f4683909f418ef5aae086"
author iuc
date Fri, 20 Mar 2020 04:58:46 -0400
parents 6c398f64ad6a
children 1d3be7700f70
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line diff
--- a/chira_map.xml	Thu Mar 12 17:05:09 2020 -0400
+++ b/chira_map.xml	Fri Mar 20 04:58:46 2020 -0400
@@ -100,7 +100,7 @@
             <param name="unmapped" value="True"/>
             <output name="mapped_bed" >
                 <assert_contents>
-                    <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2|2,mmu-miR-6898-5p,11,21,+,10M39S\t0\t+" />
+                    <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2\|2,mmu-miR-6898-5p,11,21,\+,10M39S\t1\t\+" />
                 </assert_contents>
             </output>
             <output name="unmapped_fasta" >
@@ -115,11 +115,11 @@
             <param name="query" value="reads.fasta"/>
             <param name="ref_type" value="split"/>
             <param name="ref_fasta1" value="ref1.fasta"/>
-            <param name="ref_fasta2" value="ref2.fasta"/>            
+            <param name="ref_fasta2" value="ref2.fasta"/>
             <param name="unmapped" value="True"/>
             <output name="mapped_bed" >
                 <assert_contents>
-                    <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3|2,mmu-miR-20a-5p,0,23,+,5S23M27S\t0\t+" />
+                    <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3\|2,mmu-miR-20a-5p,0,23,\+,5S23M27S\t1\t\+" />
                 </assert_contents>
             </output>
         </test>