comparison chira_quantify.xml @ 13:21e2f5f97f5d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit baafc05b1428cf0ec56a5171c41f2d429a0e0f96"

12:55d273c0c574

        <param name="min_locus_size" type="integer" value="10" label="Minimum locus size" min="1"
            help="Minimum number of reads a locus should have in order to participate in CRL creation.
                 Always set this value relative to your sequencing depth. Setting this to lower leads
                 CRLs of random multimappings Also consider setting the --crl_share option
                 along with this"/>
       <param name="em_threshold" type="float" value="0.1" label="EM threshold"
              help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/>
       <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true"
              label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" />
    </inputs>
    <outputs>

13:21e2f5f97f5d

        <param name="min_locus_size" type="integer" value="10" label="Minimum locus size" min="1"
            help="Minimum number of reads a locus should have in order to participate in CRL creation.
                 Always set this value relative to your sequencing depth. Setting this to lower leads
                 CRLs of random multimappings Also consider setting the --crl_share option
                 along with this"/>
       <param name="em_threshold" type="float" value="0.00001" label="EM threshold"
              help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/>
       <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true"
              label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" />
    </inputs>
    <outputs>