Mercurial > repos > iuc > chromeister
changeset 3:a6d1f83c46b4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chromeister commit 9a55538d87c491788ffa839f92a2f430aaf5b094"
| author | iuc |
|---|---|
| date | Tue, 19 Jan 2021 11:14:38 +0000 |
| parents | 7e2fe094981e |
| children | e483be1014b6 |
| files | chromeister.xml |
| diffstat | 1 files changed, 19 insertions(+), 1 deletions(-) [+] |
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--- a/chromeister.xml Mon Dec 14 14:10:04 2020 +0000 +++ b/chromeister.xml Tue Jan 19 11:14:38 2021 +0000 @@ -1,7 +1,7 @@ <tool id="chromeister" name="Chromeister" version="@TOOL_VERSION@"> <description>ultra-fast pairwise genome comparisons</description> <macros> - <token name="@TOOL_VERSION@">1.3.c</token> + <token name="@TOOL_VERSION@">1.5.a</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">chromeister</requirement> @@ -123,6 +123,24 @@ <has_text text="compute_score-nogrid.R"/> </assert_command> </test> + <!-- test to check grid --> + <test expect_num_outputs="5"> + <param name="query" value="mycoplasma-232.fasta"/> + <param name="db" value="mycoplasma-7422.fasta"/> + <param name="dimension" value="500"/> + <param name="grid" value="true"/> + <output name="output" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat"/> + <output name="output_imagen" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png" compare="sim_size"/> + <output name="output_csv" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.csv"/> + <output name="output_events" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.events.txt"/> + <output name="output_score" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.scr.txt"/> + <assert_command> + <has_text text="-dimension 500"/> + <has_text text="-kmer 32"/> + <has_text text="-diffuse 4"/> + <has_text text="compute_score.R"/> + </assert_command> + </test> <test expect_num_outputs="6"> <param name="query" value="mycoplasma-232.fasta"/> <param name="db" value="mycoplasma-7422.fasta"/>