Mercurial > repos > iuc > circos

diff fasta-to-karyotype.py @ 6:740057a5126d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 1584882716a1d2c598e8485da9d73bcf80d9b29a"
author iuc
date Fri, 01 May 2020 07:28:50 -0400
parents 014a21767ac4
children
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line diff
--- a/fasta-to-karyotype.py	Thu Jan 23 07:27:22 2020 -0500
+++ b/fasta-to-karyotype.py	Fri May 01 07:28:50 2020 -0400
@@ -6,7 +6,7 @@
 # Process fasta data, extracting only headers
 for idx, seq in enumerate(SeqIO.parse(sys.argv[1], "fasta")):
     sys.stdout.write(
-        "chr - {seq_id} {seq_id} 0 {length} {theme}-{color}\n".format(
+        "chr	-	{seq_id}	{seq_id}	0	{length}	{theme}-{color}\n".format(
             seq_id=seq.id,
             idx=idx,
             length=len(seq),