Mercurial > repos > iuc > circos
view fasta-to-karyotype.py @ 6:740057a5126d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 1584882716a1d2c598e8485da9d73bcf80d9b29a"
author | iuc |
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date | Fri, 01 May 2020 07:28:50 -0400 |
parents | 014a21767ac4 |
children |
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#!/usr/bin/env python import sys from Bio import SeqIO # Process fasta data, extracting only headers for idx, seq in enumerate(SeqIO.parse(sys.argv[1], "fasta")): sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} {theme}-{color}\n".format( seq_id=seq.id, idx=idx, length=len(seq), color=((idx + 1) % 12), theme=sys.argv[2], ) )