Mercurial > repos > iuc > circos
changeset 10:7f13dc906cb9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 164c36ba98fe4cd293e035efca00a9efa885a7ec"
| author | iuc |
|---|---|
| date | Mon, 11 Oct 2021 10:09:51 +0000 |
| parents | df7356989ac1 |
| children | 31a35811dda6 |
| files | circos.xml macros.xml test-data/1/links.txt |
| diffstat | 3 files changed, 27 insertions(+), 26 deletions(-) [+] |
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--- a/circos.xml Mon Nov 23 10:56:29 2020 +0000 +++ b/circos.xml Mon Oct 11 10:09:51 2021 +0000 @@ -37,8 +37,8 @@ #if $reference_genome.ref.ref_source in ('lengths', 'cached'): python '$__tool_directory__/karyotype-from-lengths.py' - #if $reference_genome.ref.ref_source == 'lengths': - ${reference_genome.ref.input_lengths}' + #if $reference_genome.ref.ref_source == 'lengths' + '${reference_genome.ref.input_lengths}' #else #if $ideogram.limit_chromosomes: ## If they are limiting the chromosomes, ensure they have access to the full list
--- a/macros.xml Mon Nov 23 10:56:29 2020 +0000 +++ b/macros.xml Mon Oct 11 10:09:51 2021 +0000 @@ -1,12 +1,13 @@ <?xml version="1.0"?> <macros> - <token name="@CIRCOS_VERSION@">0.69.8</token> + <token name="@TOOL_VERSION@">0.69.8</token> + <token name="@VERSION_SUFFIX@">8</token> - <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy7</token> + <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy@VERSION_SUFFIX@</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@CIRCOS_VERSION@">circos</requirement> + <requirement type="package" version="@TOOL_VERSION@">circos</requirement> <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="0.6.4">bcbiogff</requirement> <requirement type="package" version="1.70">biopython</requirement>
--- a/test-data/1/links.txt Mon Nov 23 10:56:29 2020 +0000 +++ b/test-data/1/links.txt Mon Oct 11 10:09:51 2021 +0000 @@ -1,21 +1,21 @@ -ctgA 0 500 ctgA 1000 1500 -ctgA 2500 3000 ctgA 3500 4000 -ctgA 5000 5500 ctgA 6000 6500 -ctgA 7500 8000 ctgA 8500 9000 -ctgA 10000 10500 ctgA 11000 11500 -ctgA 12500 13000 ctgA 13500 14000 -ctgA 15000 15500 ctgA 16000 16500 -ctgA 17500 18000 ctgA 18500 19000 -ctgA 20000 20500 ctgA 21000 21500 -ctgA 22500 23000 ctgA 23500 24000 -ctgA 25000 25500 ctgA 26000 26500 -ctgA 27500 28000 ctgA 28500 29000 -ctgA 30000 30500 ctgA 31000 31500 -ctgA 32500 33000 ctgA 33500 34000 -ctgA 35000 35500 ctgA 36000 36500 -ctgA 37500 38000 ctgA 38500 39000 -ctgA 40000 40500 ctgA 41000 41500 -ctgA 42500 43000 ctgA 43500 44000 -ctgA 45000 45500 ctgA 46000 46500 -ctgA 47500 48000 ctgA 48500 49000 -ctgA 50000 50500 ctgA 51000 51500 +ctgA 0 500 ctgA 1000 1500 +ctgA 2500 3000 ctgA 3500 4000 +ctgA 5000 5500 ctgA 6000 6500 +ctgA 7500 8000 ctgA 8500 9000 +ctgA 10000 10500 ctgA 11000 11500 +ctgA 12500 13000 ctgA 13500 14000 +ctgA 15000 15500 ctgA 16000 16500 +ctgA 17500 18000 ctgA 18500 19000 +ctgA 20000 20500 ctgA 21000 21500 +ctgA 22500 23000 ctgA 23500 24000 +ctgA 25000 25500 ctgA 26000 26500 +ctgA 27500 28000 ctgA 28500 29000 +ctgA 30000 30500 ctgA 31000 31500 +ctgA 32500 33000 ctgA 33500 34000 +ctgA 35000 35500 ctgA 36000 36500 +ctgA 37500 38000 ctgA 38500 39000 +ctgA 40000 40500 ctgA 41000 41500 +ctgA 42500 43000 ctgA 43500 44000 +ctgA 45000 45500 ctgA 46000 46500 +ctgA 47500 48000 ctgA 48500 49000 +ctgA 50000 50500 ctgA 51000 51500