Mercurial > repos > iuc > clair3

annotate test-data/all_fasta.loc @ 2:c8ba8286e7c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit fa0f3ca0b9b305a017bb37e43fe9b9a897a1149c
author iuc
date Tue, 30 Jul 2024 14:23:36 +0000
parents 44f6ec903688
children 3843a30053ee
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44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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1 #This file lists the locations and dbkeys of all the fasta files
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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2 #under the "genome" directory (a directory that contains a directory
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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3 #for each build). The script extract_fasta.py will generate the file
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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4 #all_fasta.loc. This file has the format (white space characters are
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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5 #TAB characters):
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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6 #
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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7 #<unique_build_id> <display_name> <file_path>
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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8 #
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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9 #So, all_fasta.loc could look something like this:
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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10 test1 "Test Genome" ${__HERE__}/test1.fasta