Mercurial > repos > iuc > clair3
annotate test-data/all_fasta.loc @ 3:3843a30053ee draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
author | iuc |
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date | Mon, 09 Sep 2024 09:10:43 +0000 |
parents | 44f6ec903688 |
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44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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1 #This file lists the locations and dbkeys of all the fasta files |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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2 #under the "genome" directory (a directory that contains a directory |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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3 #for each build). The script extract_fasta.py will generate the file |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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4 #all_fasta.loc. This file has the format (white space characters are |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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5 #TAB characters): |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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6 # |
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3843a30053ee
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
iuc
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7 #<unique_build_id> <dbkey> <display_name> <file_path> |
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44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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8 # |
44f6ec903688
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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9 #So, all_fasta.loc could look something like this: |
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3843a30053ee
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
iuc
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10 test1 test1 "Test Genome" ${__HERE__}/test1.fasta |