comparison clustering_from_distmat.xml @ 2:f8ee933de3ca draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustering_from_distmat/ commit e4b7fe74660f4d57fce7a5708bdbddaf769cc968

1:c0b01c55a0e0

<tool id="clustering_from_distmat" name="Distance matrix-based hierarchical clustering" version="1.1" profile="23.0">
    <description>using Scipy</description>
    <macros>
        <xml name="cluster_assignment_options">
            <param name="min_cluster_size" type="integer" value="2" min="1" label="Mask clusters with less than this number of samples" help="Samples assigned to clusters smaller than this threshold will have '-' in the corresponding cluster ID column" />
            <param name="generate_dendrogram" type="boolean" label="Produce also the dendrogram of clustering results" />

            <when value="n-cluster">
                <param name="n_cluster" type="integer" value="5" min="1" label="How many clusters to divide into?" />
                <expand macro="cluster_assignment_options" />
            </when>
            <when value="height">
                <param name="height" type="float" value="5.0" label="Distance threshold for clusters to be reported" />
                <expand macro="cluster_assignment_options" />
            </when>
        </conditional>
    </inputs>
    <outputs>

2:f8ee933de3ca

<tool id="clustering_from_distmat" name="Distance matrix-based hierarchical clustering" version="1.1.1" profile="23.0">
    <description>using Scipy</description>
    <macros>
        <xml name="cluster_assignment_options">
            <param name="min_cluster_size" type="integer" value="2" min="1" label="Mask clusters with less than this number of samples" help="Samples assigned to clusters smaller than this threshold will have '-' in the corresponding cluster ID column" />
            <param name="generate_dendrogram" type="boolean" label="Produce also the dendrogram of clustering results" />

            <when value="n-cluster">
                <param name="n_cluster" type="integer" value="5" min="1" label="How many clusters to divide into?" />
                <expand macro="cluster_assignment_options" />
            </when>
            <when value="height">
                <param name="height" type="float" value="5.0" label="Distance threshold for sample clustering" help="Samples that are LESS than this distance from each other will be assigned to the same cluster." />
                <expand macro="cluster_assignment_options" />
            </when>
        </conditional>
    </inputs>
    <outputs>