Mercurial > repos > iuc > cnvkit_batch
comparison batch.xml @ 2:ec07e22c41f8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit bced16a45d19b243a244a093c3b3504b2640d5e0
| author | iuc |
|---|---|
| date | Mon, 22 Apr 2024 17:44:06 +0000 |
| parents | 4653aeb60243 |
| children | 97d2b6742760 |
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| 1:4653aeb60243 | 2:ec07e22c41f8 |
|---|---|
| 174 <assert_contents><has_text text="chromosome"/></assert_contents> | 174 <assert_contents><has_text text="chromosome"/></assert_contents> |
| 175 </output> | 175 </output> |
| 176 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> | 176 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> |
| 177 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> | 177 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> |
| 178 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> | 178 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> |
| 179 <output name="out_reference_cnn" file="reference.cnn" /> | 179 <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size"> |
| 180 <assert_contents><has_size value="3000" delta="2000" /></assert_contents> | |
| 181 </output> | |
| 180 <output name="out_capture_target"> | 182 <output name="out_capture_target"> |
| 181 <assert_contents><has_text_matching expression="chrM"/></assert_contents> | 183 <assert_contents><has_text_matching expression="chrM"/></assert_contents> |
| 182 </output> | 184 </output> |
| 183 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> | 185 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> |
| 184 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> | 186 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> |
| 215 <assert_contents><has_text text="chromosome"/></assert_contents> | 217 <assert_contents><has_text text="chromosome"/></assert_contents> |
| 216 </output> | 218 </output> |
| 217 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> | 219 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> |
| 218 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> | 220 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> |
| 219 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> | 221 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> |
| 220 <output name="out_reference_cnn" file="reference.cnn" /> | 222 <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size"> |
| 223 <assert_contents><has_size value="3000" delta="2000" /></assert_contents> | |
| 224 </output> | |
| 221 <output name="out_capture_target"> | 225 <output name="out_capture_target"> |
| 222 <assert_contents><has_text_matching expression="chrM"/></assert_contents> | 226 <assert_contents><has_text_matching expression="chrM"/></assert_contents> |
| 223 </output> | 227 </output> |
| 224 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> | 228 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> |
| 225 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> | 229 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> |