Mercurial > repos > iuc > cnvkit_batch

diff batch.xml @ 2:ec07e22c41f8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit bced16a45d19b243a244a093c3b3504b2640d5e0
author iuc
date Mon, 22 Apr 2024 17:44:06 +0000
parents 4653aeb60243
children 97d2b6742760
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line diff
--- a/batch.xml	Fri Sep 29 15:39:59 2023 +0000
+++ b/batch.xml	Mon Apr 22 17:44:06 2024 +0000
@@ -176,7 +176,9 @@
             <output name="out_capture_antitarget" file="capture.antitarget.bed" />
             <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" />
             <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" />
-            <output name="out_reference_cnn" file="reference.cnn" />
+            <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size">
+                <assert_contents><has_size value="3000" delta="2000" /></assert_contents>
+            </output>
             <output name="out_capture_target">
                 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
             </output>
@@ -217,7 +219,9 @@
             <output name="out_capture_antitarget" file="capture.antitarget.bed" />
             <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" />
             <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" />
-            <output name="out_reference_cnn" file="reference.cnn" />
+            <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size">
+                <assert_contents><has_size value="3000" delta="2000" /></assert_contents>
+            </output>
             <output name="out_capture_target">
                 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
             </output>