Mercurial > repos > iuc > cnvkit_call

comparison test-data/ref-tas.cnn @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents 2120d778cfde
children
comparison
equal deleted inserted replaced
1:cc56d01a0b36 2:0a5e2fc51dfb
1 chromosome start end gene log2 depth spread 1 chromosome start end gene log2 depth spread
2 chrM 576 647 - 13.2947 96.2958 19.7107 2 chrM 576 848 - 3.256 91.9926 4.82735
3 chrM 647 1601 - 1.74063 22.022 2.58065 3 chrM 848 1121 - 0.884565 5.9011 1.31146
4 chrM 1601 1670 - 0.474375 3.10145 0.703308 4 chrM 1121 1394 - -0.165367 1.4359 0.245173
5 chrM 1670 3229 - -0.147713 1.6068 0.218999 5 chrM 1394 1667 - 0.909286 3.78022 1.34811
6 chrM 3229 3304 - 0 1.57333 0 6 chrM 1667 1940 - 0 1.80586 0
7 chrM 3306 4262 - 0.0246175 1.8295 0.0364979 7 chrM 1940 2212 - -2.82466 0.0404412 4.18784
8 chrM 4262 4331 - -10.4357 0 15.472 8 chrM 2212 2485 - -0.0642305 1.65201 0.0952281
9 chrM 4328 4400 - -2.11465 0.0972222 3.13518 9 chrM 2485 2758 - 0.01695 4.0696 0.0251301
10 chrM 4401 4469 - 0.106455 1.82353 0.157829 10 chrM 2758 3031 - -0.315323 0.717949 0.467498
11 chrM 4469 5511 - 0.501029 3.54127 0.742825 11 chrM 3031 3304 - 0.157569 1.33333 0.233612
12 chrM 5511 5579 - 0.394622 3.20588 0.585067 12 chrM 3306 3579 - -0.387402 0.626374 0.574362
13 chrM 5586 5655 - -10.4457 0 15.4869 13 chrM 3579 3853 - 0 2.30292 0
14 chrM 3853 4126 - 0.202715 2.74359 0.300545
15 chrM 4126 4400 - -0.259225 0.748175 0.384327
16 chrM 4401 4695 - -0.0877248 0.94898 0.130061
17 chrM 4695 4990 - 0.16791 5.01695 0.248943
18 chrM 4990 5284 - -0.25963 1.73129 0.384927
19 chrM 5284 5579 - 0.810516 5.97966 1.20167
20 chrM 5586 5655 - -10.4795 0 15.5369
14 chrM 5656 5729 - 0 0 0 21 chrM 5656 5729 - 0 0 0
15 chrM 5760 5826 - 0 1.06061 0 22 chrM 5760 5891 - 0.415822 1.79389 0.616498
16 chrM 5825 5891 - 0.627211 2.5303 0.929902 23 chrM 5903 6171 - 0.131623 2.15299 0.195144
17 chrM 5903 7445 - 0.845795 2.01297 1.25398 24 chrM 6171 6440 - 0 2.02974 0
18 chrM 7445 7514 - 0.118826 1.85507 0.176171 25 chrM 6440 6708 - -0.0963015 1.51493 0.142777
19 chrM 7517 7585 - -0.884742 0.544118 1.31172 26 chrM 6708 6977 - 0 2.03717 0
20 chrM 7585 8269 - 0 1.85088 0 27 chrM 6977 7245 - 0.40989 3.05597 0.607703
21 chrM 8294 8364 - -10.0424 0 14.8889 28 chrM 7245 7514 - -0.047091 1.24907 0.0698171
22 chrM 8365 8572 - -0.774496 0.623188 1.14827 29 chrM 7517 7767 - 0.271996 1.944 0.403261
23 chrM 8526 9207 - 2.12113 2.88693 3.14479 30 chrM 7767 8018 - 0.07072 2.24701 0.104849
24 chrM 9206 9990 - 0 1.97194 0 31 chrM 8018 8269 - -0.415822 1.00797 0.616498
25 chrM 9990 10058 - -10.5541 0 15.6474 32 chrM 8294 8364 - -10.0057 0 14.8345
26 chrM 10058 10404 - -0.412764 1.11272 0.611965 33 chrM 8365 8630 - 0 1.0717 0
27 chrM 10404 10469 - -10.5842 0 15.6921 34 chrM 8630 8896 - 0.485791 2.07895 0.720233
28 chrM 10469 10766 - 0 1.69024 0 35 chrM 8896 9162 - 0.280695 3.66165 0.416158
29 chrM 10759 12137 - 0.227328 2.3164 0.337036 36 chrM 9162 9427 - 0.563397 3.60755 0.835292
30 chrM 12137 12206 - -0.173094 1.76812 0.256628 37 chrM 9427 9693 - -0.195679 0.808271 0.290114
31 chrM 12206 12265 - 0 0.152542 0 38 chrM 9693 9959 - 0 2.07143 0
32 chrM 12265 12336 - -8.64364 0 12.8151 39 chrM 9959 10224 - -4.10122 0.00377358 6.08048
33 chrM 12336 14148 - 0.0642475 2.15563 0.0952533 40 chrM 10224 10490 - -0.248445 1.44361 0.368345
34 chrM 14148 14673 - 0.148476 2.24762 0.220131 41 chrM 10490 10756 - -0.0920355 1.82331 0.136452
35 chrM 14673 14742 - 1.10758 8.5942 1.64209 42 chrM 10756 11022 - -0.51737 1.12406 0.767054
36 chrM 14746 15887 - 0.490853 3.49167 0.727739 43 chrM 11022 11287 - 0.26621 4.27925 0.394683
37 chrM 15887 15953 - -10.4334 0 15.4685 44 chrM 11287 11553 - 0.350607 2.93609 0.519809
45 chrM 11553 11819 - -0.0341651 1.06015 0.0506531
46 chrM 11819 12084 - 0.590516 2.40377 0.875498
47 chrM 12084 12350 - -1.0261 0.736842 1.5213
48 chrM 12350 12616 - -0.64663 0.736842 0.958694
49 chrM 12616 12882 - 0.295587 2.48872 0.438237
50 chrM 12882 13147 - 0.50247 4.50943 0.744962
51 chrM 13147 13413 - -0.322016 1.47368 0.477422
52 chrM 13413 13679 - 0.356127 2.95865 0.527993
53 chrM 13679 13944 - -0.0012925 1.64906 0.00191626
54 chrM 13944 14210 - -0.865739 0.890977 1.28355
55 chrM 14210 14476 - -0.4233 2.21053 0.627585
56 chrM 14476 14742 - 0.598181 4.45489 0.886863
57 chrM 14746 14987 - 1.03347 8.14523 1.53222
58 chrM 14987 15228 - 0.355932 2.48133 0.527704
59 chrM 15228 15470 - 0 1.11157 0
60 chrM 15470 15711 - 0.393765 3.9751 0.583796
61 chrM 15711 15953 - -0.312504 0.809917 0.463318
38 chrM 15955 16023 - 0 0 0 62 chrM 15955 16023 - 0 0 0