Mercurial > repos > iuc > cnvkit_call

diff test-data/ref-tas.cnn @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents 2120d778cfde
children
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--- a/test-data/ref-tas.cnn	Sun May 14 21:23:36 2023 +0000
+++ b/test-data/ref-tas.cnn	Fri Sep 29 15:40:43 2023 +0000
@@ -1,38 +1,62 @@
 chromosome	start	end	gene	log2	depth	spread
-chrM	576	647	-	13.2947	96.2958	19.7107
-chrM	647	1601	-	1.74063	22.022	2.58065
-chrM	1601	1670	-	0.474375	3.10145	0.703308
-chrM	1670	3229	-	-0.147713	1.6068	0.218999
-chrM	3229	3304	-	0	1.57333	0
-chrM	3306	4262	-	0.0246175	1.8295	0.0364979
-chrM	4262	4331	-	-10.4357	0	15.472
-chrM	4328	4400	-	-2.11465	0.0972222	3.13518
-chrM	4401	4469	-	0.106455	1.82353	0.157829
-chrM	4469	5511	-	0.501029	3.54127	0.742825
-chrM	5511	5579	-	0.394622	3.20588	0.585067
-chrM	5586	5655	-	-10.4457	0	15.4869
+chrM	576	848	-	3.256	91.9926	4.82735
+chrM	848	1121	-	0.884565	5.9011	1.31146
+chrM	1121	1394	-	-0.165367	1.4359	0.245173
+chrM	1394	1667	-	0.909286	3.78022	1.34811
+chrM	1667	1940	-	0	1.80586	0
+chrM	1940	2212	-	-2.82466	0.0404412	4.18784
+chrM	2212	2485	-	-0.0642305	1.65201	0.0952281
+chrM	2485	2758	-	0.01695	4.0696	0.0251301
+chrM	2758	3031	-	-0.315323	0.717949	0.467498
+chrM	3031	3304	-	0.157569	1.33333	0.233612
+chrM	3306	3579	-	-0.387402	0.626374	0.574362
+chrM	3579	3853	-	0	2.30292	0
+chrM	3853	4126	-	0.202715	2.74359	0.300545
+chrM	4126	4400	-	-0.259225	0.748175	0.384327
+chrM	4401	4695	-	-0.0877248	0.94898	0.130061
+chrM	4695	4990	-	0.16791	5.01695	0.248943
+chrM	4990	5284	-	-0.25963	1.73129	0.384927
+chrM	5284	5579	-	0.810516	5.97966	1.20167
+chrM	5586	5655	-	-10.4795	0	15.5369
 chrM	5656	5729	-	0	0	0
-chrM	5760	5826	-	0	1.06061	0
-chrM	5825	5891	-	0.627211	2.5303	0.929902
-chrM	5903	7445	-	0.845795	2.01297	1.25398
-chrM	7445	7514	-	0.118826	1.85507	0.176171
-chrM	7517	7585	-	-0.884742	0.544118	1.31172
-chrM	7585	8269	-	0	1.85088	0
-chrM	8294	8364	-	-10.0424	0	14.8889
-chrM	8365	8572	-	-0.774496	0.623188	1.14827
-chrM	8526	9207	-	2.12113	2.88693	3.14479
-chrM	9206	9990	-	0	1.97194	0
-chrM	9990	10058	-	-10.5541	0	15.6474
-chrM	10058	10404	-	-0.412764	1.11272	0.611965
-chrM	10404	10469	-	-10.5842	0	15.6921
-chrM	10469	10766	-	0	1.69024	0
-chrM	10759	12137	-	0.227328	2.3164	0.337036
-chrM	12137	12206	-	-0.173094	1.76812	0.256628
-chrM	12206	12265	-	0	0.152542	0
-chrM	12265	12336	-	-8.64364	0	12.8151
-chrM	12336	14148	-	0.0642475	2.15563	0.0952533
-chrM	14148	14673	-	0.148476	2.24762	0.220131
-chrM	14673	14742	-	1.10758	8.5942	1.64209
-chrM	14746	15887	-	0.490853	3.49167	0.727739
-chrM	15887	15953	-	-10.4334	0	15.4685
+chrM	5760	5891	-	0.415822	1.79389	0.616498
+chrM	5903	6171	-	0.131623	2.15299	0.195144
+chrM	6171	6440	-	0	2.02974	0
+chrM	6440	6708	-	-0.0963015	1.51493	0.142777
+chrM	6708	6977	-	0	2.03717	0
+chrM	6977	7245	-	0.40989	3.05597	0.607703
+chrM	7245	7514	-	-0.047091	1.24907	0.0698171
+chrM	7517	7767	-	0.271996	1.944	0.403261
+chrM	7767	8018	-	0.07072	2.24701	0.104849
+chrM	8018	8269	-	-0.415822	1.00797	0.616498
+chrM	8294	8364	-	-10.0057	0	14.8345
+chrM	8365	8630	-	0	1.0717	0
+chrM	8630	8896	-	0.485791	2.07895	0.720233
+chrM	8896	9162	-	0.280695	3.66165	0.416158
+chrM	9162	9427	-	0.563397	3.60755	0.835292
+chrM	9427	9693	-	-0.195679	0.808271	0.290114
+chrM	9693	9959	-	0	2.07143	0
+chrM	9959	10224	-	-4.10122	0.00377358	6.08048
+chrM	10224	10490	-	-0.248445	1.44361	0.368345
+chrM	10490	10756	-	-0.0920355	1.82331	0.136452
+chrM	10756	11022	-	-0.51737	1.12406	0.767054
+chrM	11022	11287	-	0.26621	4.27925	0.394683
+chrM	11287	11553	-	0.350607	2.93609	0.519809
+chrM	11553	11819	-	-0.0341651	1.06015	0.0506531
+chrM	11819	12084	-	0.590516	2.40377	0.875498
+chrM	12084	12350	-	-1.0261	0.736842	1.5213
+chrM	12350	12616	-	-0.64663	0.736842	0.958694
+chrM	12616	12882	-	0.295587	2.48872	0.438237
+chrM	12882	13147	-	0.50247	4.50943	0.744962
+chrM	13147	13413	-	-0.322016	1.47368	0.477422
+chrM	13413	13679	-	0.356127	2.95865	0.527993
+chrM	13679	13944	-	-0.0012925	1.64906	0.00191626
+chrM	13944	14210	-	-0.865739	0.890977	1.28355
+chrM	14210	14476	-	-0.4233	2.21053	0.627585
+chrM	14476	14742	-	0.598181	4.45489	0.886863
+chrM	14746	14987	-	1.03347	8.14523	1.53222
+chrM	14987	15228	-	0.355932	2.48133	0.527704
+chrM	15228	15470	-	0	1.11157	0
+chrM	15470	15711	-	0.393765	3.9751	0.583796
+chrM	15711	15953	-	-0.312504	0.809917	0.463318
 chrM	15955	16023	-	0	0	0